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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00016144-protein ID=TCONS_00016144-protein|Name=TCONS_00016144-protein|organism=Clytia hemisphaerica|type=polypeptide|length=348bp
MTTEELLNKLDQICKCGVCLERFHEPKQLVCQHIFCQQCLMQACVTNKMG
LMTLFCPTCRERQPLVYRSFDVMKLKPSFFVNQILEVLVEFAVGNGKLLP
HSLSTPQKLLNTKITSVYKSINTDTLEHMTQIRTDEFGVRDLKVQELEEQ
VQRSKEINSQLLIDNYIMKAKLGEPLDQSSDSNLKQASREVSIKKNISQD
SESVSNTKCKQLQISDIEKTQGTSHIEAKLNRYLRKKALNNIQREVDDQK
CDQEKSKITENENVIPIKKDTKPKGKKHIEKDKVETRKESNVEESPRDFC
WRCLRRGHTGVECKENKTILGRYICSKCDKVGHNSNHCQLTAGHSIVD Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 144..164 |
| None | No IPR available | SUPERFAMILY | 57850 | RING/U-box | coord: 5..92 |
| IPR001878 | Zinc finger, CCHC-type | SMART | SM00343 | c2hcfinal6 | coord: 299..315
e-value: 0.32
score: 14.2
coord: 324..340
e-value: 0.51
score: 13.0 |
| IPR001878 | Zinc finger, CCHC-type | GENE3D | 4.10.60.10 | | coord: 248..319
e-value: 0.011
score: 15.5 |
| IPR001878 | Zinc finger, CCHC-type | SUPERFAMILY | 57756 | Retrovirus zinc finger-like domains | coord: 296..339 |
| IPR001841 | Zinc finger, RING-type | SMART | SM00184 | ring_2 | coord: 16..59
e-value: 4.3E-5
score: 32.9 |
| IPR001841 | Zinc finger, RING-type | PFAM | PF13639 | zf-RING_2 | coord: 15..60
e-value: 2.1E-6
score: 27.8 |
| IPR001841 | Zinc finger, RING-type | PROSITE | PS50089 | ZF_RING_2 | coord: 16..60
score: 11.427 |
| IPR001841 | Zinc finger, RING-type | CDD | cd00162 | RING | coord: 15..61
e-value: 2.94679E-6
score: 42.818 |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | GENE3D | 3.30.40.10 | | coord: 2..247
e-value: 9.5E-13
score: 47.3 |
| IPR017907 | Zinc finger, RING-type, conserved site | PROSITE | PS00518 | ZF_RING_1 | coord: 31..40 |
Blast
The following BLAST results are available for this feature:
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