TCONS_00016119-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00016119-protein
Unique NameTCONS_00016119-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length112

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016119-protein ID=TCONS_00016119-protein|Name=TCONS_00016119-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
MPPKDPKLRNITIKTGVVKRLAKEKTMYEKETAQQEAKIEKMKADGKDEY
DIKKMIEVKGESAAMIMDCLNRLKKAHQELKTILDNDTDYAESEEYKAAQ
DIYSDASSVISA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009008XLOC_009008Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016119TCONS_00016119Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004226TBCA
Vocabulary: Biological Process
TermDefinition
GO:0007023post-chaperonin tubulin folding pathway
GO:0007021tubulin complex assembly
Vocabulary: Molecular Function
TermDefinition
GO:0048487beta-tubulin binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007023 post-chaperonin tubulin folding pathway
biological_process GO:0007021 tubulin complex assembly
molecular_function GO:0048487 beta-tubulin binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 18..45
NoneNo IPR availableGENE3D1.20.58.90coord: 6..108
e-value: 3.8E-32
score: 110.1
IPR004226Tubulin binding cofactor APFAMPF02970TBCAcoord: 11..97
e-value: 8.0E-29
score: 99.7
IPR004226Tubulin binding cofactor APRODOMPD010430coord: 14..100
e-value: 6.0E-20
score: 234.0
IPR004226Tubulin binding cofactor ASUPERFAMILY46988Tubulin chaperone cofactor Acoord: 7..106

Blast
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BLAST of TCONS_00016119-protein vs. Swiss-Prot (Human)
Match: TBCA (Tubulin-specific chaperone A OS=Homo sapiens GN=TBCA PE=1 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 8.108e-32
Identity = 56/96 (58.33%), Postives = 70/96 (72.92%), Query Frame = 0 
Query:    5 DPKLRNITIKTGVVKRLAKEKTMYEKETAQQEAKIEKMKADGKDEYDIKKMIEVKGESAAMIMDCLNRLKKAHQELKTILDNDTDYAESEEYKAAQ 100
            DP++R I IKTGVVKRL KEK MYEKE  QQE KIEKM+A+  + YDIKK  E+  ES  MI DC  RL+ A+ +L+ IL+N+ D  E+EEYK A+
Sbjct:    3 DPRVRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQESRMMIPDCQRRLEAAYLDLQRILENEKDLEEAEEYKEAR 98
The following BLAST results are available for this feature:
BLAST of TCONS_00016119-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBCA8.108e-3258.33Tubulin-specific chaperone A OS=Homo sapiens GN=TB... [more]
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