TCONS_00016114-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00016114-protein
Unique Name	TCONS_00016114-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	260

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00016114-protein ID=TCONS_00016114-protein|Name=TCONS_00016114-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
MSLQKCVALITGGAQGFGRAFTERLLKEGAKVAILDINDSKGKAFEAEMG
KTYGANHIKYLHCDVTNQTELFGRFEEAKENFGSLNLVCNNAGILTSKPE
DTKKAIDINLTAVIQGTFKAIDLMSKKNNGDGGLVVNIASAAGIAIMRGE
PIYTATKQGVVAFTQSFEFLPTLEEDGVRVNCLCPFVSDTDMARNAFKNN
YNDKYAKFYQKMGFAEIDDTVNSFMRCVNEKKMNANCIAIYPKNMVFDVH
FPDARPSSKL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_009007	XLOC_009007	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00016114	TCONS_00016114	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002347	SDR_fam
IPR016040	NAD(P)-bd_dom

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002347	Short-chain dehydrogenase/reductase SDR	PRINTS	PR00080	SDRFAMILY	coord: 153..172 score: 31.05 coord: 83..94 score: 43.17 coord: 133..141 score: 48.33
IPR002347	Short-chain dehydrogenase/reductase SDR	PRINTS	PR00081	GDHRDH	coord: 176..193 score: 36.04 coord: 153..172 score: 27.13 coord: 127..143 score: 31.35 coord: 7..24 score: 46.31 coord: 83..94 score: 46.07
IPR002347	Short-chain dehydrogenase/reductase SDR	PFAM	PF00106	adh_short	coord: 7..199 e-value: 4.1E-42 score: 143.7
None	No IPR available	GENE3D	3.40.50.720		coord: 1..243 e-value: 2.8E-44 score: 151.0
IPR016040	NAD(P)-binding domain	SUPERFAMILY	51735	NAD(P)-binding Rossmann-fold domains	coord: 4..240

Blast

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BLAST of TCONS_00016114-protein vs. Swiss-Prot (Human)
Match: PGDH (15-hydroxyprostaglandin dehydrogenase [NAD(+)] OS=Homo sapiens GN=HPGD PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.735e-46
Identity = 86/260 (33.08%), Postives = 139/260 (53.46%), Query Frame = 0

Query:    1 MSLQKCVALITGGAQGFGRAFTERLLKEGAKVAILDINDSKGKAFEAEMGKTYGANHIKYLHCDVTNQTELFGRFEEAKENFGSLNLVCNNAGILTSKPEDTKKAIDINLTAVIQGTFKAIDLMSKKNNGDGGLVVNIASAAGIAIMRGEPIYTATKQGVVAFTQSFEFLPTLEEDGVRVNCLCPFVSDTDMARNAFKN-------NYNDKYAKFYQKMGFAEIDDTVNSFMRCVNEKKMNANCIAIYPKNMVFDVHFPD 253
            M +   VAL+TG AQG GRAF E LL +GAKVA++D N   G   +A + + +      ++ CDV +Q +L   F +  ++FG L+++ NNAG+   K  + +K + INL +VI GT+  +D MSK+N G+GG+++N++S AG+  +  +P+Y A+K G+V FT+S      L   GVR+N +CP   +T +  +  K         Y D      +  G  +     N  +  + +  +N   + I        +HF D
Sbjct:    1 MHVNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALDEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFGRLDILVNNAGVNNEK--NWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMIKYYGILDPPLIANGLITLIEDDALNGAIMKITTSK---GIHFQD 255

The following BLAST results are available for this feature:

BLAST of TCONS_00016114-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00016114-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PGDH	1.735e-46	33.08	15-hydroxyprostaglandin dehydrogenase [NAD(+)] OS=...	[more]

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TCONS_00016114-protein (polypeptide) - C. hemisphaerica