TCONS_00016089-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00016089-protein
Unique Name	TCONS_00016089-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	245

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00016089-protein ID=TCONS_00016089-protein|Name=TCONS_00016089-protein|organism=Clytia hemisphaerica|type=polypeptide|length=245bp
MASWDSEDFDVDTNEPAVVGVSDKWEGEDEDDDIADSWDALDEDEDKEKP
KTTTQPKKKKTLDEKIKEREEKRRLEKLAREEERKREEEANRELTPEEQM
AEKLRQQRLQEESDLELAKEAFGTTEDMPGVKTIDKFVPDNREEFNELSQ
MLVTKLQDLENKSEYPGFLETLFRDCCASVDAETIKKIASTLNVLASEKQ
KLSKPKAGKKKGAKTTNTLKAGKASTKSDMSGFNDDYYDEYEDFM

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_008998	XLOC_008998	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00016089	TCONS_00016089	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013906	eIF3j
IPR023194	eIF3-like_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003743	translation initiation factor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm
GO:0005852	eukaryotic translation initiation factor 3 complex

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005852	eukaryotic translation initiation factor 3 complex
molecular_function	GO:0003743	translation initiation factor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 142..162
None	No IPR available	COILS	Coil	Coil	coord: 58..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 203..227
IPR013906	Eukaryotic translation initiation factor 3 subunit J	PFAM	PF08597	eIF3_subunit	coord: 1..245 e-value: 6.3E-61 score: 206.3
IPR013906	Eukaryotic translation initiation factor 3 subunit J	HAMAP	MF_03009	eIF3j	coord: 2..245 score: 15.938
IPR023194	Eukaryotic translation initiation factor 3-like domain	GENE3D	1.10.246.60		coord: 134..207 e-value: 4.7E-24 score: 84.0

Blast

[Close]

BLAST of TCONS_00016089-protein vs. Swiss-Prot (Human)
Match: EIF3J (Eukaryotic translation initiation factor 3 subunit J OS=Homo sapiens GN=EIF3J PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.051e-32
Identity = 102/252 (40.48%), Postives = 144/252 (57.14%), Query Frame = 0

Query:    3 SWDSEDFDVDTNEPAVVGVS----DKWEGEDEDDDIADSWDALDEDEDKE---KPKTTTQPKKKKTLDEKIKEREEKRRLEKLAREEERKREEEANRELTPEEQMAEKLRQQRLQEESDLELAKEAFGTTEDMPGVKTIDKFVPDNREEFNELSQMLVTKLQDLENKSEYPGFLETLFRDCCASVDAETIKKIASTLNVLA--SEKQKLSKPKAGKKKGAKTTNTLKAGKASTKSDMSGFNDDYYDEYEDFM 245
            SWD++ F V+     V G      D+WEGEDED+D+ D+WD  D+++ +E   KP+     KKK     K KER++K+R E++ +   R  E E  + LTPEEQ+A+KLR ++LQEESDLELAKE FG    + G   ID   P +R++F E  ++L  K+   E    Y  FLE L RD C S++ + +KKI ++L VL    +KQ+       KKKG      LKA      +D  G++  Y  +YEDFM
Sbjct:   13 SWDADAFSVEDPVRKVGGGGTAGGDRWEGEDEDEDVKDNWDDDDDEKKEEAEVKPEVKISEKKKIAEKIKEKERQQKKRQEEIKK---RLEEPEEPKVLTPEEQLADKLRLKKLQEESDLELAKETFGVNNAVYG---IDAMNPSSRDDFTEFGKLLKDKITQYEKSLYYASFLEVLVRDVCISLEIDDLKKITNSLTVLCSEKQKQEKQSKAKKKKKGVVPGGGLKATMKDDLADYGGYDGGYVQDYEDFM 258

The following BLAST results are available for this feature:

BLAST of TCONS_00016089-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00016089-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
EIF3J	1.051e-32	40.48	Eukaryotic translation initiation factor 3 subunit...	[more]

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TCONS_00016089-protein (polypeptide) - C. hemisphaerica