TCONS_00016007-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00016007-protein
Unique Name	TCONS_00016007-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	509

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00016007-protein ID=TCONS_00016007-protein|Name=TCONS_00016007-protein|organism=Clytia hemisphaerica|type=polypeptide|length=509bp
MTTVVNTTLTTITPGNQTTNGTALPPGNNRLNPYAVIFVEVICILVFFLG
IVGNSLVLIVFGYRWKKLKLFEIFMMNLAFADLIGTIVIPLKMLLELMEL
SFISIGHTGCKIISFLPMTTITVSSLTLLIISLDRYIIVRWPLRKPIEGW
QIALTLFLTWTFAAGLSFIYLLGDRIMLYDNPKDHLPDIHFCRNFMPLHE
NATHIVVAFFIQLVIPLLAMSVLYSLIAVELRRVATCHLFSQNEREVGIR
LKRNRKATFLFVTIVAAFYIFVLPSNIFFLMYILKAIPHDNMPKLFLIYT
LLQMILMFNSCVNPVIYSNLHTSFRRSTLKLFCSCIFKRFKNYDWEGMGG
SLRSVMRKSSRSVRSSFQSSRDLMSSMRRKSTESIYKRRQSAESLFKRRQ
STDSVNNNIALTIRDRSLPNSTQPSPSQFSGKFRASPEFERCMIRNLQNQ
KKHNRLKSDDCFSSSDDVFEEVRSPMIQKDFPSPKYMTREKKRKVLNSLH
EQTTLEEVL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_008940	XLOC_008940	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00016007	TCONS_00016007	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000276	GPCR_Rhodpsn
IPR017452	GPCR_Rhodpsn_7TM

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000276	G protein-coupled receptor, rhodopsin-like	PRINTS	PR00237	GPCRRHODOPSN	coord: 71..92 score: 29.17 coord: 38..62 score: 27.66 coord: 117..139 score: 30.95 coord: 205..228 score: 25.04 coord: 257..281 score: 23.12 coord: 299..325 score: 29.9
IPR000276	G protein-coupled receptor, rhodopsin-like	PFAM	PF00001	7tm_1	coord: 53..317 e-value: 1.4E-36 score: 126.1
IPR000276	G protein-coupled receptor, rhodopsin-like	PROSITE	PS00237	G_PROTEIN_RECEP_F1_1	coord: 123..139
None	No IPR available	GENE3D	1.20.1070.10		coord: 4..401 e-value: 1.2E-55 score: 188.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 407..433
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 366..386
None	No IPR available	SUPERFAMILY	81321	Family A G protein-coupled receptor-like	coord: 14..346
IPR017452	GPCR, rhodopsin-like, 7TM	PROSITE	PS50262	G_PROTEIN_RECEP_F1_2	coord: 53..317 score: 35.016

Blast

[Close]

BLAST of TCONS_00016007-protein vs. Swiss-Prot (Human)
Match: BRS3 (Bombesin receptor subtype-3 OS=Homo sapiens GN=BRS3 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.981e-20
Identity = 81/316 (25.63%), Postives = 159/316 (50.32%), Query Frame = 0

Query:   27 GNNRLNPYAVIFVEVICILVFFLGIVGNSLVLIVFGYRWKKLKLF-EIFMMNLAFADLIGT-IVIPLKMLLELMELSFISIGHTGCKIISFLPMTTITVSSLTLLIISLDRYIIVRWPL-RKPIEG-WQIALTLFLTWTFAAGLSFIYLLGDRIMLYDNPKDHLPDIHFCRNFMPLHE---NATHIVVAFFIQLVIPLLAMSVLYSLIAVELRRVATCHLFSQNEREVGIRLKRNRKATFLFVTIVAAFYIFVLPSNIFFLMYILKAIPHDNMPKLFLIYTLLQMILMF-NSCVNPVIYSNLHTSFRRS-TLKLFC 333
            G+N     A+  + +   ++  +GI+GN++++ VF ++ K ++    IF+ +LAF DL+     +P+     L E      G  GCK++SF+ +T++ VS  TL I+S DRY  V  PL R+P     +  +     W  +   +    +   +  + +P  ++     C ++ P+ +      H ++ F +  +IPL  +SV YSLIA  L + +T ++ ++ +     +++  ++     + +VA F +  LP+++ +L +   +  + +   +  I+T+   +L F NSCVNP     L  SF++    +LFC
Sbjct:   38 GDNSPGIEALCAIYITYAVIISVGILGNAILIKVF-FKTKSMQTVPNIFITSLAFGDLLLLLTCVPVDATHYLAEGWLF--GRIGCKVLSFIRLTSVGVSVFTLTILSADRYKAVVKPLERQPSNAILKTCVKAGCVWIVSMIFALPEAIFSNVYTFRDPNKNM-TFESCTSY-PVSKKLLQEIHSLLCFLVFYIIPLSIISVYYSLIARTLYK-STLNIPTEEQSHARKQIESRKRIARTVLVLVALFALCWLPNHLLYLYHSFTSQTYVDPSAMHFIFTIFSRVLAFSNSCVNPFALYWLSKSFQKHFKAQLFC 347

The following BLAST results are available for this feature:

BLAST of TCONS_00016007-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00016007-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
BRS3	5.981e-20	25.63	Bombesin receptor subtype-3 OS=Homo sapiens GN=BRS...	[more]

You are here

TCONS_00016007-protein (polypeptide) - C. hemisphaerica