TCONS_00016000-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00016000-protein
Unique NameTCONS_00016000-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length822

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016000-protein ID=TCONS_00016000-protein|Name=TCONS_00016000-protein|organism=Clytia hemisphaerica|type=polypeptide|length=822bp
MRLTTIVTLVTCYATCMLLFSEQANGAIASVKTTAKKLSGSFFKIAQGAR
GPSGARGPSGARGGRGKNSNTLPGAVDLTFIIDRSGSVGRRNFDLSLRFI
EEILNFWSVSPSTTRVAALSYATDVRTEFRFNSHVNRECVIRAVKRIRYN
GGLTSTAPSLRTSRALYQSSTSGARPSAKKVVFFLTDGRSNRGGNPATPA
LQLRNIGAQIFVLGIGTSVRVSELNSIASKNNNGENLVFRVRNFAELQSL
INEVKKEQTNRVQCSGSGTRHDECGRRCRCSGGKLVECCRVRKDFPSMSI
EEKERYVSAVKTVSTQQPYKAKYDALVKIHIDNFNRGIHDRNQFLPWHRW
YLLQFENILREVDCRVTMPYWDWSLWSHNPWSANAIWSAIGNRGFGGNGN
PSQGWCVNTGPFRTPIWSITTGVCLRRQFNGNVPDAVAVQNCRNINNFFD
FELTLRVPLHNNVHVRIGGNIGTMSTGDSANAPEFQLHHGFVDKIWSDWQ
KRSSTNLNVHFPSINSRMSATPYYPRDLIDLRNQPGCVRVCYDEPSTNNG
RRVTSFLKRLSPSQLARVPRIPFSKLDSRANRLFRLSRSEIARARVLEAR
LRRGIVSGRSKKVSFKSKLERTLGFKLSTPPRISIRPKGPIGPIGPVGPI
GRPRPPGPPRGGIGRPVPQLRFKDEELNEEEHFRDEMDDDVESANDNELT
SQQKDELDDLENENNEQRDTEEKENEKDQDNKEENFEDEQEEDEQEQDSD
EEENNENEQGEQEDEGVESEEETKADNDEEEQEQEDEGEENENNNNNSAE
TEEDEGDAYVEDVQDEEQNEGY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_008937XLOC_008937Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016000TCONS_00016000Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002227Tyrosinase_Cu-bd
IPR002035VWF_A
IPR008922Unchr_di-copper_centre
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
molecular_function GO:0016491 oxidoreductase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 693..753
NoneNo IPR availableCOILSCoilCoilcoord: 767..797
NoneNo IPR availablePRINTSPR00453VWFADOMAINcoord: 181..189
score: 47.22
coord: 115..129
score: 34.62
coord: 76..93
score: 41.77
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 630..822
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..70
NoneNo IPR availableCDDcd01450vWFA_subfamily_ECMcoord: 76..239
e-value: 5.86471E-38
score: 138.964
IPR002227Tyrosinase copper-binding domainPRINTSPR00092TYROSINASEcoord: 368..373
score: 66.33
coord: 459..470
score: 42.86
coord: 481..499
score: 47.26
coord: 339..356
score: 50.34
IPR002227Tyrosinase copper-binding domainPFAMPF00264Tyrosinasecoord: 458..502
e-value: 4.3E-10
score: 40.2
coord: 321..417
e-value: 8.3E-18
score: 65.4
IPR002227Tyrosinase copper-binding domainPROSITEPS00497TYROSINASE_1coord: 339..356
IPR002035von Willebrand factor, type ASMARTSM00327VWA_4coord: 75..252
e-value: 3.7E-36
score: 136.1
IPR002035von Willebrand factor, type AGENE3D3.40.50.410coord: 65..254
e-value: 7.0E-34
score: 116.9
IPR002035von Willebrand factor, type APFAMPF00092VWAcoord: 77..252
e-value: 2.0E-38
score: 132.3
IPR002035von Willebrand factor, type APROSITEPS50234VWFAcoord: 77..254
score: 31.174
IPR002035von Willebrand factor, type ASUPERFAMILY53300vWA-likecoord: 73..257
IPR008922Uncharacterised domain, di-copper centreGENE3D1.10.1280.10coord: 255..549
e-value: 2.4E-50
score: 171.4
IPR008922Uncharacterised domain, di-copper centreSUPERFAMILY48056Di-copper centre-containing domaincoord: 289..534

Blast
[Close]
BLAST of TCONS_00016000-protein vs. Swiss-Prot (Human)
Match: COCA1 (Collagen alpha-1(XII) chain OS=Homo sapiens GN=COL12A1 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 3.913e-24
Identity = 68/190 (35.79%), Postives = 101/190 (53.16%), Query Frame = 0 
Query:   77 DLTFIIDRSGSVGRRNFDLSLRFIEEILNFWSVSPSTTRVAALSYATDVRTEFRFNSHVNRECVIRAVKRIRYNGGLTSTAPSLRTSRALYQSSTSGARPSAKKVVFFLTDGRSNRGGNPATPALQLRNIGAQIFVLGIGTSVRVSELNSIASKNNNGENLVFRVRNFAELQSLINEVKKEQTNRVQCSG 266
            DL F++D S SVGR NF   L FI  +++ + +    TRV  + Y++D RTEF  N +  R+ ++ A+K+I Y GG T T  ++        + ++GAR    KV   +TDG+S        PA +LRN+G ++F LGI  +    EL  IAS  +   N VF V NF  +  + NE+  +      CSG
Sbjct:  140 DLVFLVDGSWSVGRNNFKYILDFIAALVSAFDIGEEKTRVGVVQYSSDTRTEFNLNQYYQRDELLAAIKKIPYKGGNTMTGDAIDYLVKNTFTESAGARVGFPKVAIIITDGKSQ--DEVEIPARELRNVGVEVFSLGI-KAADAKELKQIASTPS--LNHVFNVANFDAIVDIQNEIISQ-----VCSG 319

HSP 2 Score: 94.7449 bits (234), Expect = 1.265e-19
Identity = 58/187 (31.02%), Postives = 98/187 (52.41%), Query Frame = 0 
Query:   77 DLTFIIDRSGSVGRRNFDLSLRFIEEILNFWSVSPSTTRVAALSYATDVRTEFRFNSHVNRECVIRAVKRIRYNGGLTSTAPSLRTSRALYQSSTSGARPSAKKVVFFLTDGRSNRGGNPATPALQLRNIGAQIFVLGIGTSVRVSELNSIASKNNNGENLVFRVRNFAELQSLINEVKKEQTNRVQ 263
            D+ F++D S S+G  NF     F+E ++  + +SP+  +++ + Y+ D  TEF        E +I A+    Y GG T+T  ++   R      + G+R +  KV+  +TDG+S+       PA++LRN   +IF +G+  +VR SEL +IAS     E  VF V +F   Q +  E+ +    R++
Sbjct:  440 DIVFLVDGSYSIGIANFVKVRAFLEVLVKSFEISPNRVQISLVQYSRDPHTEFTLKKFTKVEDIIEAINTFPYRGGSTNTGKAMTYVREKIFVPSKGSRSNVPKVMILITDGKSSDAFR--DPAIKLRNSDVEIFAVGVKDAVR-SELEAIASP--PAETHVFTVEDFDAFQRISFELTQSICLRIE 621

HSP 3 Score: 94.3597 bits (233), Expect = 1.461e-19
Identity = 55/190 (28.95%), Postives = 102/190 (53.68%), Query Frame = 0 
Query:   77 DLTFIIDRSGSVGRRNFDLSLRFIEEILNFWSVSPSTTRVAALSYATDVRTEFRFNSHVNRECVIRAVKRIRYNGGLTSTAPSLRTSRALYQSSTSGARPSAKKVVFFLTDGRSNRGGNPATPALQLRNIGAQIFVLGIGTSVRVSELNSIASKNNNGENLVFRVRNFAELQSLINEVKKEQTNRVQCSG 266
            D+  ++D S S+GR NF     FI  I+  + + P   ++A   Y+ D RTE++ N+H +++ +++AV  + Y GG T T  +L   R     + +G RP A+K+   +TDG+S    +   P+ +L++ G ++F +GI  +  V EL  IA+  ++     + V +F  L  +++++     N V+  G
Sbjct: 1199 DIVLLVDGSWSIGRANFRTVRSFISRIVEVFDIGPKRVQIALAQYSGDPRTEWQLNAHRDKKSLLQAVANLPYKGGNTLTGMALNFIRQQNFRTQAGMRPRARKIGVLITDGKSQ--DDVEAPSKKLKDEGVELFAIGIKNADEV-ELKMIATDPDDTH--AYNVADFESLSRIVDDLTINLCNSVKGPG 1383

HSP 4 Score: 87.8113 bits (216), Expect = 1.800e-17
Identity = 57/175 (32.57%), Postives = 98/175 (56.00%), Query Frame = 0 
Query:   77 DLTFIIDRSGSVGRRNFDLSLRFI-EEILNFWSVSPSTTRVAALSYATDVRTEFRFNSHVNRECVIRAVKRIRYNGGLTSTAPSLRTSRALYQSSTSGARPSAKKVVFFLTDGRSNRGGNPATPALQLRNIGAQIFVLGIGTSVRVSELNSIASKNNNGENLVFRVRNFAELQSL 250
            D+ F+ D S S+G  NF+  ++FI   +  F  +SP+  +V+ + Y+ +V++EF+ N++ ++   + A++ IRY GG T T  +L   +    +  SG R +  KV+  +TDGRS      A  AL ++  G  +FV+G+   V  +EL +IASK +  E  VF V +F   + +
Sbjct: 2323 DIVFLTDASWSIGDDNFNKVVKFIFNTVGGFDEISPAGIQVSFVQYSDEVKSEFKLNTYNDKALALGALQNIRYRGGNTRTGKALTFIKEKVLTWESGMRKNVPKVLVVVTDGRSQDEVKKA--ALVIQQSGFSVFVVGVA-DVDYNELANIASKPS--ERHVFIVDDFESFEKI 2492
The following BLAST results are available for this feature:
BLAST of TCONS_00016000-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
COCA13.913e-2435.79Collagen alpha-1(XII) chain OS=Homo sapiens GN=COL... [more]
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