TCONS_00015972-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00015972-protein
Unique NameTCONS_00015972-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length164

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00015972-protein ID=TCONS_00015972-protein|Name=TCONS_00015972-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
MVVKWIRSIISSSKKLVGKDPFGNFYFEVVKGSGRVQRSFDGQTKHEEYQ
TGDLPHEWEAWLRGKRTEPPSDEEIIKNLKYSAQVQMRAVKRSAEDDERQ
AKAYAEGLIQREPPSTGKSTASKSSSPPPGTDSNYQPNSWSPGGGSAAQT
EEAKYEPDSWKPGS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_008924XLOC_008924Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00015972TCONS_00015972Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007763NDUFA12
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0008137NADH dehydrogenase (ubiquinone) activity
GO:0009055electron carrier activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0009055 electron carrier activity
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007763NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12PFAMPF05071NDUFA12coord: 15..91
e-value: 1.0E-9
score: 39.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 90..164

Blast
[Close]
BLAST of TCONS_00015972-protein vs. Swiss-Prot (Human)
Match: NDUF2 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 2 OS=Homo sapiens GN=NDUFAF2 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.340e-16
Identity = 49/158 (31.01%), Postives = 79/158 (50.00%), Query Frame = 0 
Query:    7 RSIISSSKKLVGKDPFGNFYFEVVKGSG------RVQRSFDGQTKHE-EYQTGDLPHEWEAWLRGKRTEPPSDEEIIKNLKYSAQVQMRAVKRSAEDDERQAKAYAEGLIQREPPSTGKSTASKSSSP----------PPGTDSNYQPNSWSPGGGSA 147
            RS+    K+ VG D FGN Y+ + +         R +R  +   K E +Y+ GD+P EWEAW+R  R  PP+ EEI+KN K+  ++++++ +   E ++  +K  +E L+   PP         +S+P          P  T   +QP SW P  G +
Sbjct:   13 RSLSREVKEHVGTDQFGNKYYYIPQYKNWRGQTIREKRIVEAANKKEVDYEAGDIPTEWEAWIRRTRKTPPTMEEILKNEKHREEIKIKS-QDFYEKEKLLSKETSEELL---PPPVQTQIKGHASAPYFGKEEPSVAPSSTGKTFQPGSWMPRDGKS 166
The following BLAST results are available for this feature:
BLAST of TCONS_00015972-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NDUF22.340e-1631.01NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
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