TCONS_00015967-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00015967-protein
Unique Name	TCONS_00015967-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	697

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00015967-protein ID=TCONS_00015967-protein|Name=TCONS_00015967-protein|organism=Clytia hemisphaerica|type=polypeptide|length=697bp
MELATLIKIVFLHASFALWHLNSAQEFAPLSRTANTLQNTFLKIAASSSS
SSRRGRNSPPGPVELIFIIDKSGSIGRKNFALSLKFVQELTRFFSISPST
TRVASISYSTSVRTEFQLNNYLNRECLTSAIRRIRYTAGATATGPALQQA
ITLFQSARRSAKKVVFLLTDGKSNRGIKPSIPAAQLKNSGVDIFVLGIGS
NVNVLELKSIASSNNNVFRVRNFVDLQRLINALRQKPRDVCRGRGKKLDE
CGRRCSCVRGKLVNCCRVRKDFPSMSAREKELYVKAYKTMTTQQPYKRKY
DALVNIHRTFFQTPIHEQREFLPWHRYYLLQLENILREVDCRVTVPYWDW
SLWSHDPWSANAIWSPIAHRGLGGNGNPARDFCVTTGPFREGAWQTERGQ
CLRRDFNGNVPDAVQVQFCLNLVPFVDFEIFLRLNLHDLVHVSIGGFEGQ
MSFVTSANVPEFNLHHCFVDKIWHDWQKKSSANFNAFFPGINTRMTQTPY
FPRDFINLQRQPGCVKVCYDDPFTNNARSVTAFLRRLSVAQLQTLKRSSF
SMVTKQVTDMFKPSKHDQTRAKEMEMSARKGVVATGQKIDLTSSIERIIG
FKLSIINRPTLNIRPLRRSDAEKENDVGDDESSVEDDVGDVGDDESYVEN
DASLQDDEEDSIDDSIEDSNATTSDEEEEEEEEEEEEEDAFVEDDEN

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_008923	XLOC_008923	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00015967	TCONS_00015967	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002227	Tyrosinase_Cu-bd
IPR002035	VWF_A
IPR008922	Unchr_di-copper_centre

Vocabulary: **Biological Process**
Term	Definition
GO:0008152	metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0016491	oxidoreductase activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
molecular_function	GO:0016491	oxidoreductase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 666..694
None	No IPR available	PRINTS	PR00453	VWFADOMAIN	coord: 102..116 score: 37.44 coord: 164..172 score: 46.15 coord: 63..80 score: 40.28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 617..697
None	No IPR available	CDD	cd01472	vWA_collagen	coord: 63..223 e-value: 3.91688E-40 score: 143.908
IPR002227	Tyrosinase copper-binding domain	PRINTS	PR00092	TYROSINASE	coord: 316..333 score: 52.38 coord: 436..447 score: 37.59 coord: 345..350 score: 65.99 coord: 458..476 score: 46.4
IPR002227	Tyrosinase copper-binding domain	PFAM	PF00264	Tyrosinase	coord: 298..479 e-value: 4.8E-25 score: 89.1
IPR002227	Tyrosinase copper-binding domain	PROSITE	PS00497	TYROSINASE_1	coord: 316..333
IPR002035	von Willebrand factor, type A	SMART	SM00327	VWA_4	coord: 62..238 e-value: 1.8E-38 score: 143.8
IPR002035	von Willebrand factor, type A	GENE3D	3.40.50.410		coord: 32..238 e-value: 1.1E-36 score: 126.0
IPR002035	von Willebrand factor, type A	PFAM	PF00092	VWA	coord: 65..230 e-value: 2.3E-40 score: 138.6
IPR002035	von Willebrand factor, type A	PROSITE	PS50234	VWFA	coord: 64..233 score: 29.818
IPR002035	von Willebrand factor, type A	SUPERFAMILY	53300	vWA-like	coord: 53..236
IPR008922	Uncharacterised domain, di-copper centre	GENE3D	1.10.1280.10		coord: 239..535 e-value: 1.4E-49 score: 168.8
IPR008922	Uncharacterised domain, di-copper centre	SUPERFAMILY	48056	Di-copper centre-containing domain	coord: 267..510

Blast

[Close]

BLAST of TCONS_00015967-protein vs. Swiss-Prot (Human)
Match: COCA1 (Collagen alpha-1(XII) chain OS=Homo sapiens GN=COL12A1 PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.208e-28
Identity = 80/197 (40.61%), Postives = 109/197 (55.33%), Query Frame = 0

Query:   64 ELIFIIDKSGSIGRKNFALSLKFVQELTRFFSISPSTTRVASISYSTSVRTEFQLNNYLNRECLTSAIRRIRYTAGATATGPAL----QQAITLFQSARRSAKKVVFLLTDGKSNRGIKPSIPAAQLKNSGVDIFVLGIGSNVNVLELKSIAS--SNNNVFRVRNF---VDLQRLINALRQKPRDVCRGRGKKLDEC 251
            +L+F++D S S+GR NF   L F+  L   F I    TRV  + YS+  RTEF LN Y  R+ L +AI++I Y  G T TG A+    +   T    AR    KV  ++TDGKS   ++  IPA +L+N GV++F LGI +  +  ELK IAS  S N+VF V NF   VD+Q  I +       VC G  ++L E 
Sbjct:  140 DLVFLVDGSWSVGRNNFKYILDFIAALVSAFDIGEEKTRVGVVQYSSDTRTEFNLNQYYQRDELLAAIKKIPYKGGNTMTGDAIDYLVKNTFTESAGARVGFPKVAIIITDGKSQDEVE--IPARELRNVGVEVFSLGIKA-ADAKELKQIASTPSLNHVFNVANFDAIVDIQNEIIS------QVCSGVDEQLGEL 327

HSP 2 Score: 108.612 bits (270), Expect = 4.002e-24
Identity = 100/431 (23.20%), Postives = 185/431 (42.92%), Query Frame = 0

Query:   64 ELIFIIDKSGSIGRKNFALSLKFVQELTRFFSISPSTTRVASISYSTSVRTEFQLNNYLNRECLTSAIRRIRYTAGATATGPAL----QQAITLFQSARRSAKKVVFLLTDGKSNRGIKPSIPAAQLKNSGVDIFVLGIGSNVNVLELKSIAS--SNNNVFRVRNFVDLQRLINALRQKPRDVCRGRG-----------KKLDECGRRCSCVRGKLVNCCRVRKDFPSMSAREKELYVKAYKTMTTQQPYKRKYDALVNIHRTF---FQTPIHEQREFLPWHRYYLLQLENILREVDCRVTVPYWDWSLWSHDPWSANAIWSPIAHRGLGGNGNPARDFCVTTGPFREGAWQTERGQCLRRDFNGNVPDAVQVQFCLNLVPFVDFEIFLRLNLHDLVHVSIGGFEGQMSFVTSANVPEFNLHHCFVDKIWH 474
            +++ ++D S SIGR NF     F+  +   F I P   ++A   YS   RTE+QLN + +++ L  A+  + Y  G T TG AL    QQ        R  A+K+  L+TDGKS   ++   P+ +LK+ GV++F +GI  N + +ELK IA+   + + + V +F  L R+++ L     +  +G G           ++     R         V+  +V   +P    + +E YV   +T T  +  K + + +VN++      +  P+    + LP                     VP    +++   P + +  W P+     GG    A  + ++  P ++   +  R + +R       P    +Q   +LVP  ++ + ++  LHDL    +   E  +      ++   ++ H  ++  W 
Sbjct: 1199 DIVLLVDGSWSIGRANFRTVRSFISRIVEVFDIGPKRVQIALAQYSGDPRTEWQLNAHRDKKSLLQAVANLPYKGGNTLTGMALNFIRQQNFRTQAGMRPRARKIGVLITDGKSQDDVE--APSKKLKDEGVELFAIGI-KNADEVELKMIATDPDDTHAYNVADFESLSRIVDDLTINLCNSVKGPGDLEAPSNLVISERTHRSFRVSWTPPSDSVDRYKVEY-YPVSGGKRQEFYVSRMETSTVLKDLKPETEYVVNVYSVVEDEYSEPLKGTEKTLP---------------------VPVVSLNIYDVGPTTMHVQWQPV-----GG----ATGYILSYKPVKD--TEPTRPKEVRLG-----PTVNDMQLT-DLVPNTEYAVTVQAVLHDLTSEPVTVREVTLPLPRPQDLKLRDVTHSTMNVFWE 1587

HSP 3 Score: 94.7449 bits (234), Expect = 7.390e-20
Identity = 61/178 (34.27%), Postives = 98/178 (55.06%), Query Frame = 0

Query:   64 ELIFIIDKSGSIGRKNFALSLKFVQELTRFFSISPSTTRVASISYSTSVRTEFQLNNYLNRECLTSAIRRIRYTAGATATGPAL----QQAITLFQSARRSAKKVVFLLTDGKSNRGIKPSIPAAQLKNSGVDIFVLGIGSNVNVLELKSIAS--SNNNVFRVRNFVDLQRLINALRQ 235
            +++F++D S SIG  NF     F++ L + F ISP+  +++ + YS    TEF L  +   E +  AI    Y  G+T TG A+    ++     + +R +  KV+ L+TDGKS+   +   PA +L+NS V+IF +G+   V   EL++IAS  +  +VF V +F   QR+   L Q
Sbjct:  440 DIVFLVDGSYSIGIANFVKVRAFLEVLVKSFEISPNRVQISLVQYSRDPHTEFTLKKFTKVEDIIEAINTFPYRGGSTNTGKAMTYVREKIFVPSKGSRSNVPKVMILITDGKSSDAFRD--PAIKLRNSDVEIFAVGVKDAVRS-ELEAIASPPAETHVFTVEDFDAFQRISFELTQ 614

HSP 4 Score: 93.5893 bits (231), Expect = 1.849e-19
Identity = 60/177 (33.90%), Postives = 104/177 (58.76%), Query Frame = 0

Query:   64 ELIFIIDKSGSIGRKNFALSLKFV-QELTRFFSISPSTTRVASISYSTSVRTEFQLNNYLNRECLTSAIRRIRYTAGATATGPAL----QQAITLFQSARRSAKKVVFLLTDGKSNRGIKPSIPAAQLKNSGVDIFVLGIGSNVNVLELKSIAS--SNNNVFRVRNFVDLQRLINAL 233
            +++F+ D S SIG  NF   +KF+   +  F  ISP+  +V+ + YS  V++EF+LN Y ++     A++ IRY  G T TG AL    ++ +T     R++  KV+ ++TDG+S   +K +  A  ++ SG  +FV+G+ ++V+  EL +IAS  S  +VF V +F   +++ + L
Sbjct: 2323 DIVFLTDASWSIGDDNFNKVVKFIFNTVGGFDEISPAGIQVSFVQYSDEVKSEFKLNTYNDKALALGALQNIRYRGGNTRTGKALTFIKEKVLTWESGMRKNVPKVLVVVTDGRSQDEVKKA--ALVIQQSGFSVFVVGV-ADVDYNELANIASKPSERHVFIVDDFESFEKIEDNL 2496

The following BLAST results are available for this feature:

BLAST of TCONS_00015967-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00015967-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
COCA1	1.208e-28	40.61	Collagen alpha-1(XII) chain OS=Homo sapiens GN=COL...	[more]

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TCONS_00015967-protein (polypeptide) - C. hemisphaerica