TCONS_00015952-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00015952-protein
Unique Name	TCONS_00015952-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	828

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00015952-protein ID=TCONS_00015952-protein|Name=TCONS_00015952-protein|organism=Clytia hemisphaerica|type=polypeptide|length=828bp
MSEMKFVLIILLICSTVLVRSVSGNVGTYLYGLFSLTNCTGQYQCQNAQI
NAQRMLKLYKPSQHDVLKLCIKDIQEDVSLLYDVLFGIIDPDDDKVEMSG
ICKGKNGIKLAKRSKMFIFTYLSFELTRIVSSILLVRDVVVVSVTEEKMY
PSYYLEHPLSFYSDQLSLGQGSHETVIKKFMKQLQIDNVIILSLAVANSD
GDAVSKGFLHGNRTKTRGSVSLRRRCEKEFLSPSAFCFYVTHHPQNCFSE
LTVNLRKDNVTQILKELKTERYNFIMLDGPADLIGEFKVTAGSIQLYAGS
PFYFGFVQLSKELLYDDSRNQELSYSNGALINFPGAFGINTFMQYVHEAS
HTLMNSALVWNGFKRHKHFRDQLQFFGFLAYYEIIKYDPTFQRGAIMTFE
TWSKVPEPRRQLVINSILSERETYIAALEQGKDLFYPDVLTLDYLKTQFY
FNPMEALRDCKKCNDSIPICKPGQELQHGYFKSVNWSASYGRHCKKCRKG
FYKTSIGNKQCAKCDKPNRVNKDRTKCFDPYTLSYLNSADPIPISWLAFS
GLIFIMVFTTSVIFIYYRTTPIVLSSNKEMTVLQLLFHLILTITLPVMFI
GTLHQSTCYARPIVIGISLSIILTVNLSKTQKLFLVFAMKVRVSTSQKLL
TNSLEWLLILVVLLVDGVLLAVSFTNLNDPPDAIFKYDNYRLVKEQTCNN
NDVVLTQLFFILFLVFLNCIQGYRARSLPSYFKENTHVIYSSFFSVILLI
ATTSIYFLQTKHLVREITIIIAAGTLNFVNFALIYLYKVYIILFHPERNS
KSVFHEERKRKIQQRFDKKTIKRMVKST

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_008912	XLOC_008912	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00015952	TCONS_00015952	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000337	GPCR_3
IPR017978	GPCR_3_C

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000337	GPCR, family 3	PRINTS	PR00248	GPCRMGR	coord: 570..592 score: 30.98 coord: 710..733 score: 22.66 coord: 616..637 score: 28.41
None	No IPR available	GENE3D	2.10.50.10		coord: 450..707 e-value: 3.1E-5 score: 23.3
IPR017978	GPCR family 3, C-terminal	PFAM	PF00003	7tm_3	coord: 555..791 e-value: 2.0E-22 score: 80.1
IPR017978	GPCR family 3, C-terminal	PROSITE	PS50259	G_PROTEIN_RECEP_F3_4	coord: 542..808 score: 23.281

Blast

[Close]

BLAST of TCONS_00015952-protein vs. Swiss-Prot (Human)
Match: GRM5 (Metabotropic glutamate receptor 5 OS=Homo sapiens GN=GRM5 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 6.476e-24
Identity = 100/385 (25.97%), Postives = 177/385 (45.97%), Query Frame = 0

Query:  429 EQGKDLFYPDVLTLDYLKTQFYFNPMEALRD----CKKCNDSIPIC-KPGQELQHGYFKSVNWSASYGRHCKKCRKGFYKTSIGNKQCAKCDKPNRVNKDRTKCFDPYTLSYLNSADPIPISWLAFSGLIFIMVFTTSVIFIYYRTTPIVLSSNKEMTVLQLLFHLILTITLPVMFIGTLHQSTCYARPIVIGISLSIILTVNLSKTQKLFLVFA-MKVRVSTSQKLLTNSLEWLLILVVLLVD--GVLLAVSFTNLNDPPDAIFKYDNYRLVKEQTCNNNDV-VLTQLFFILFLVFLNCIQGYRARSLPSYFKENTHVIYSSFFSVILLIATTSIYFLQTKHLVREITIIIAAGTLNFVNFALIYLYKVYIILFHPERNSKSVF 804
            E GKD F       DY+    + N    + D     KK N    +C +P ++ Q    +    S  +   C  C++  Y        C  C   +    D T C D   + YL   DP PI+ + F+ L  +     +V+FI YR TP+V SS++E+  + +L  + L        I    Q  CY + I IG+S ++  +  ++KT ++  + A  K ++ T +    ++   L+I  +L+    G+++A+    + +PPD +  Y + R V    CN  ++ V+T L +   L+       ++ R++P+ F E  ++ ++ + + I+ +A   IYF     +   IT+  +      V    +++ KVYIIL  PERN +S F
Sbjct:  473 EMGKDYF-------DYINVGSWDNGELKMDDDEVWSKKSNIIRSVCSEPCEKGQIKVIRKGEVSCCW--TCTPCKENEY--VFDEYTCKACQLGSWPTDDLTGC-DLIPVQYLRWGDPEPIAAVVFACLGLLATLFVTVVFIIYRDTPVVKSSSRELCYI-ILAGICLGYLCTFCLIAKPKQIYCYLQRIGIGLSPAMSYSALVTKTNRIARILAGSKKKICTKKPRFMSACAQLVIAFILICIQLGIIVALF---IMEPPDIMHDYPSIREVY-LICNTTNLGVVTPLGYNGLLILSCTFYAFKTRNVPANFNEAKYIAFTMYTTCIIWLAFVPIYFGSNYKI---ITMCFSVSLSATVALGCMFVPKVYIILAKPERNVRSAF 837

The following BLAST results are available for this feature:

BLAST of TCONS_00015952-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00015952-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GRM5	6.476e-24	25.97	Metabotropic glutamate receptor 5 OS=Homo sapiens ...	[more]

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TCONS_00015952-protein (polypeptide) - C. hemisphaerica