TCONS_00015807-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00015807-protein
Unique NameTCONS_00015807-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length189

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00015807-protein ID=TCONS_00015807-protein|Name=TCONS_00015807-protein|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
MGNTITNFFKNLFGKMDCRILMVGLDAAGKTTILYYFKLGGELVHTLPTI
GFNVETVHYKNLEFTVWDIGGQDRIRALWRLYYQETEGIIFVVDSHDRER
IREARFELFKLLKEDDLQEAVLLVYANKQDLPGAMSTTEITDKLGLLSLR
NRNWYIQATSAVKGDGLYAGMEWMSREVRNQKRKKSSRK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_008842XLOC_008842Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00015807TCONS_00015807Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006689Small_GTPase_ARF/SAR
IPR005225Small_GTP-bd_dom
IPR024156Small_GTPase_ARF
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
Vocabulary: Biological Process
TermDefinition
GO:0007264small GTPase mediated signal transduction
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007264 small GTPase mediated signal transduction
cellular_component GO:0005622 intracellular
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006689Small GTPase superfamily, ARF/SAR typePRINTSPR00328SAR1GTPBPcoord: 120..141
score: 35.56
coord: 75..100
score: 37.78
coord: 19..42
score: 48.04
IPR006689Small GTPase superfamily, ARF/SAR typePFAMPF00025Arfcoord: 6..177
e-value: 6.3E-69
score: 230.8
NoneNo IPR availableSMARTSM00177arf_sub_2coord: 1..182
e-value: 3.0E-105
score: 365.6
NoneNo IPR availableSMARTSM00178sar_sub_1coord: 6..178
e-value: 2.1E-22
score: 90.5
NoneNo IPR availableGENE3D3.40.50.300coord: 2..184
e-value: 2.7E-46
score: 156.6
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 17..143
e-value: 2.4E-21
score: 74.2
IPR024156Small GTPase superfamily, ARF typePROSITEPS51417ARFcoord: 11..178
score: 22.779
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 15..184

Blast
[Close]
BLAST of TCONS_00015807-protein vs. Swiss-Prot (Human)
Match: ARF1 (ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 PE=1 SV=2)

HSP 1 Score: 273.092 bits (697), Expect = 8.053e-95
Identity = 129/182 (70.88%), Postives = 153/182 (84.07%), Query Frame = 0 
Query:    1 MGNTITNFFKNLFGKMDCRILMVGLDAAGKTTILYYFKLGGELVHTLPTIGFNVETVHYKNLEFTVWDIGGQDRIRALWRLYYQETEGIIFVVDSHDRERIREARFELFKLLKEDDLQEAVLLVYANKQDLPGAMSTTEITDKLGLLSLRNRNWYIQATSAVKGDGLYAGMEWMSREVRNQK 182
            MGN   N FK LFGK + RILMVGLDAAGKTTILY  KLG E+V T+PTIGFNVETV YKN+ FTVWD+GGQD+IR LWR Y+Q T+G+IFVVDS+DRER+ EAR EL ++L ED+L++AVLLV+ANKQDLP AM+  EITDKLGL SLR+RNWYIQAT A  GDGLY G++W+S ++RNQK
Sbjct:    1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLG-EIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK 181
The following BLAST results are available for this feature:
BLAST of TCONS_00015807-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARF18.053e-9570.88ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 ... [more]
back to top