TCONS_00015658-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00015658-protein
Unique Name	TCONS_00015658-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	864

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00015658-protein ID=TCONS_00015658-protein|Name=TCONS_00015658-protein|organism=Clytia hemisphaerica|type=polypeptide|length=864bp
FRELIEKVMSIKTFDLVPVVDRVNPGGEKVKSSIQCIEQIFENLYLGTSD
CFIVHYCIEKGTNNIGKTIFMNRLQRNKNLALRKPIVQLLGLPTIGQILV
LIDGCVSVVSMYGLEFLRGTPSRDLLRNITVMARNTKPLTSTHGTCQICV
GTRRKTIQIITISADECTVLKEINLQGVPSTLSMYQQFICSNVGNQYYMI
DFTKSNLQELFMYEAHVKPVVKQLSSDEFLLSGPTDMMGMIVTSKGLSMH
QPLSFLDGCQSVAFSYPYILVLGESSITVHSILDQQQKQGISFTGGVLIT
DFDGQVFIAMQRSVMAFLPVPFNKQIQMLLIDKRIDEAFDLLIVSSKLNP
KQYDQTYVKQVKAQAAFVHFADGQFSKALPLFVESCVDPREVIVLYPMMM
PSNKNFTPSRPLLHNIKDLTEIVKGSKSVFADSKKMLLNYLEGIRNNFEN
CKEEIDTTLLKLYAECNHANLSDLITNQNSIFPAEALTWLTQCKRHHALA
LFHSYLQQHKKSLDIWHKLMKGELTDDKFPGISFVAQFLTDLKDISLVWT
SSSWVMKEDQKLGASIFIKREDSSLNSDQVSDFLQKYPIALQSYLEHLVY
EKESRSEQHHTHLANIYVDRVVSLLNNTLKEKSEVEEARSKLQSLLESSS
LYRVSTVLQKISHFPLYKELATLYGKIDQHQKALKILIYQLKDFDAAEHY
CDTIVDGKESFKKQRIFLDLLQIYLYPDPNESNLGPEHYVVAAKTLLNKR
QKEFNIVSVLNIIPEEWTVNMVQGFLRGSMRERFSATRESKIESNLQKQF
YLQTKEHHITRHKDVVKMTDERLCDFCRKPFTESTAARYPNGKVVHIRCS
GNKSMCPVTGKKFK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_008737	XLOC_008737	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00015658	TCONS_00015658	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019453	VPS39/TGF_beta_rcpt-assoc_2
IPR000547	Clathrin_H-chain/VPS_repeat
IPR011990	TPR-like_helical_dom
IPR019452	VPS39/TGF_beta_rcpt-assoc_1
IPR001180	CNH_dom
IPR015943	WD40/YVTN_repeat-like_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0016192	vesicle-mediated transport
GO:0006886	intracellular protein transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0016192	vesicle-mediated transport
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 625..645
IPR019453	Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2	PFAM	PF10367	Vps39_2	coord: 746..850 e-value: 6.4E-26 score: 90.8
IPR000547	Clathrin, heavy chain/VPS, 7-fold repeat	PFAM	PF00637	Clathrin	coord: 586..706 e-value: 1.2E-8 score: 34.9
IPR000547	Clathrin, heavy chain/VPS, 7-fold repeat	PROSITE	PS50236	CHCR	coord: 564..729 score: 20.465
IPR011990	Tetratricopeptide-like helical domain	GENE3D	1.25.40.10		coord: 590..836 e-value: 3.6E-30 score: 104.8
IPR019452	Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1	PFAM	PF10366	Vps39_1	coord: 455..556 e-value: 1.9E-13 score: 50.5
IPR001180	Citron homology (CNH) domain	PFAM	PF00780	CNH	coord: 86..290 e-value: 1.1E-7 score: 31.7
IPR001180	Citron homology (CNH) domain	PROSITE	PS50219	CNH	coord: 31..306 score: 18.795
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 22..349 e-value: 0.0014 score: 17.4

Blast

[Close]

BLAST of TCONS_00015658-protein vs. Swiss-Prot (Human)
Match: TGFA1 (Transforming growth factor-beta receptor-associated protein 1 OS=Homo sapiens GN=TGFBRAP1 PE=1 SV=1)

HSP 1 Score: 553.903 bits (1426), Expect = 0.000e+0
Identity = 294/860 (34.19%), Postives = 489/860 (56.86%), Query Frame = 0

Query:    8 VMSIKTFDLVPVVDRVNPGGEKVKSSIQCIEQIFENLYLGTSDCFIVHYCIEKGTNNIGKTIFMNRLQRNKNLALRKPIVQLLGLPTIGQILVLIDGCVSVVSMYGLEFLRGTPSRDLLRNITVMARNTKPLTSTHGTCQICV-GTRRKTIQIITISADECTVLKEINLQGVPSTLSMYQQFICSNVGNQYYMIDFTKSNLQELFMYEAHVKP-VVKQLSSDEFLLSGPTDMMGMIVTSKGLSMHQPLSFLDGCQSVAFSYPYILVLGESSITVHSILDQQQKQGISFTGGVLITDFDGQVFIAMQRSVMAFLPVPFNKQIQMLLIDKRIDEAFDLLIVSSKLNPKQYDQTYVKQVKAQAAFVHFADGQFSKALPLFVESCVDPREVIVLYPMMMPSNKNFTPSRPLLHNIKDLTEIVKGSKSVFADSKKMLLNYLEGIRNN--FENCKEEIDTTLLKLYAECNHANLSDLITNQNSIFPAEALTWLTQCKRHHALALFHSYLQQHKKSLDIWHKLMKGELTDDKFPGI-SFVAQFLTDLKDISLVWTSSSWVMKEDQKLGASIFIKR-----EDSSLNSDQVSDFLQKYPIALQSYLEHLVYEKESRSEQHHTHLANIYVDRVVSLLNNTLKEKSEVEEARSKLQSLLESSSLYRVSTVLQKISHFPLYKELATLYGKIDQHQKALKILIYQLKDFDAAEHYCDTIVDGKESFKKQRIFLDLLQIYLYPDPNESNLGPEHYVVAAKTLLNKRQKEFNIVSVLNIIPEEWTVNMVQGFLRGSMRERFSATRESKIESNLQKQFYLQTKEHHITRHKDVVKMTDERLCDFCRKPFTESTAARYPNGKVVHIRCSGNKSMCP 857
            +MSIK F LV  V+R    G+K + +I+C+E    +LY+GT+DCF+ H+ +E+     G   F    Q  ++L  +KP+ +L     + ++LVL D  +S+V+M  LE     PS   ++     A N  P++      ++C+   +R+TIQ+  +  D   ++KE++    P  +++   F+C  +  QY + +++    Q+LF Y +  +P +VK++   EFLL+GP  + GM  T  G+S   P+ + +     A S+PY++ L +  ITVHS+LDQQQKQ + F  G ++ DF+G+V +A  + V   +P+P  KQIQ LL  +R++EA  L   + +  PK+  Q   +++  QA F+ FA  QF +A  LF    +D RE+I LYP ++P++ +FT S P LH   DL ++ +G +   A  K+ L++YL  +R+       KE+IDT LLKLYAE +H +L DL+  +N     ++  WL + K++ AL L + Y  Q   ++ +W  ++ G++ D     +  ++  FLT   D  LVW  + WV+++ +++G  +F KR     + +S N D + + L+KYP AL  YLEHLV +K  + E++HTHLA +Y++ V+    +   + +E  E ++KL+ LL+ S LYRV  +L+++    L  E A L+GK+ +H+KAL IL+++L+DF AAE YC    +G++   +Q++F  LL IYL+  P    L      VAA  LLN+   EF+   VL ++P+ W+V ++  FL G+MR+   A R  ++   L +   L      +      ++++D++LC  C+ PF E    RYPNG +VH  C+ ++   P
Sbjct:    1 MMSIKAFTLVSAVERELLMGDKERVNIECVECCGRDLYVGTNDCFVYHFLLEERPVPAGPATFTATKQLQRHLGFKKPVNELRAASALNRLLVLCDNSISLVNMLNLE---PVPSGARIKGAATFALNENPVSGDPFCVEVCIISVKRRTIQMFLVYEDRVQIVKEVSTAEQPLAVAVDGHFLCLALTTQYIIHNYSTGVSQDLFPYCSEERPPIVKRIGRQEFLLAGPGGL-GMFATVAGISQRAPVHWSENVIGAAVSFPYVIALDDEFITVHSMLDQQQKQTLPFKEGHILQDFEGRVIVATSKGVYILVPLPLEKQIQDLLASRRVEEALVLAKGARRNIPKEKFQVMYRRILQQAGFIQFAQLQFLEAKELFRSGQLDVRELISLYPFLLPTSSSFTRSHPPLHEYADLNQLTQGDQEKMAKCKRFLMSYLNEVRSTEVANGYKEDIDTALLKLYAEADHDSLLDLLVTENFCLLTDSAAWLEKHKKYFALGLLYHYNNQDAAAVQLWVNIVNGDVQDSTRSDLYEYIVDFLTYCLDEELVWAYADWVLQKSEEVGVQVFTKRPLDEQQKNSFNPDDIINCLKKYPKALVKYLEHLVIDKRLQKEEYHTHLAVLYLEEVLLQRASASGKGAEATETQAKLRRLLQKSDLYRVHFLLERLQGAGLPMESAILHGKLGEHEKALHILVHELQDFAAAEDYCLWCSEGRDPPHRQQLFHTLLAIYLHAGPTAHELA-----VAAVDLLNRHATEFDAAQVLQMLPDTWSVQLLCPFLMGAMRDSIHARRTMQVALGLARSENLIYTYDKMKLKGSSIQLSDKKLCQICQNPFCEPVFVRYPNGGLVHTHCAASRHTNP 851

The following BLAST results are available for this feature:

BLAST of TCONS_00015658-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00015658-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TGFA1	0.000e+0	34.19	Transforming growth factor-beta receptor-associate...	[more]

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TCONS_00015658-protein (polypeptide) - C. hemisphaerica