TCONS_00015629-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00015629-protein
Unique Name	TCONS_00015629-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	840

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00015629-protein ID=TCONS_00015629-protein|Name=TCONS_00015629-protein|organism=Clytia hemisphaerica|type=polypeptide|length=840bp
MDTRDSQLTPSTTAEITCMVCCEDSDCFSIGACDHPICFKCSARMRVLSN
QKYCPSCRTELDQVVYCSQLKKFNEFVLSKMLSNRKFGIRFETAFVRKRF
DALLDYVCIECGEGPLGSMQDLKSHIRKEHEKQFCLICIKNVVLFPSERK
LYNKKELVRHRKDGDADEKSHRGHPECRFCDERYFDNDALLLHLRKSHFW
CHFCEHDGKQDYYDVYESLRRHFADQHFLCDEDACANEKFTSVFRDKIDF
QAHKLAAHRKKLNKYQAKNARKVDIDYNFGGRSSGASASGGGGSTITGAD
YEDVRQSGENRGASGGRSAGRSNNNNHRYHREKNGTLNFYDYEDVEKDRK
KFLGKARRHEAEEVTDNNERAKVGRRMAATRSLSQSEPDIPSNYNNQNIT
LDDDVIGFTERLGDHTEKPKPKEKIKPVVNKTKERQPSPSPPPPPPPQQQ
QQTKPKVVKEDFPSLPGAKHYIPPTSNKKRADDFPALPKAAASKPKQANW
GTNNKDMKVLNGVVVKTAKTKKKGKTKNSKVTDENDFPSLGRTPEKSAPP
PSKFNTFVDETNSTKPVQNGGSASQKKYNENNVSKEKSKHEKQSSNQHSS
PKPSSRPPPGLSTKPPGFSTKPPGSSTKPPGLSSKPPGLSASKPTASAPP
PGYASQPADTSLADRNMRLLGMLTKFLDDFNMSLFKDLSGKLRRGQITAK
AYYDGINELLGRNLKYVFSELVALLPDERKQSELLQVHNDAKIKTKQIVE
ERREKSLAADYTKPQTWGAKTNKTVEEKLPESTCEKCGVTVRNDLIQEHL
ESHGEAFPALPVTTKKKKNYSFNPTVRHTRQNMVKSAWSK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_008721	XLOC_008721	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00015629	TCONS_00015629	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013087	Znf_C2H2_type
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 342..362
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 306..335
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 356..659
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 15..64
IPR013087	Zinc finger C2H2-type	SMART	SM00355	c2h2final6	coord: 782..803 e-value: 78.0 score: 5.4 coord: 175..198 e-value: 1.3 score: 18.0 coord: 106..130 e-value: 11.0 score: 13.1 coord: 199..227 e-value: 270.0 score: 0.6 coord: 228..258 e-value: 86.0 score: 5.0
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 177..198
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 4..87 e-value: 3.3E-5 score: 23.1
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 18..58 score: 10.055
IPR001841	Zinc finger, RING-type	CDD	cd00162	RING	coord: 17..61 e-value: 2.32715E-5 score: 41.6624

Blast

[Close]

BLAST of TCONS_00015629-protein vs. Swiss-Prot (Human)
Match: ZN598 (E3 ubiquitin-protein ligase ZNF598 OS=Homo sapiens GN=ZNF598 PE=1 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 1.674e-85
Identity = 136/321 (42.37%), Postives = 202/321 (62.93%), Query Frame = 0

Query:   17 TCMVCCEDSDCFSIGACDHPICFKCSARMRVLSNQKYCPSCRTELDQVVYCSQLKKFNEFVLSKMLSNRKFGIRFETAFVRKRFDALLDYVCIECGEGPLGSM-QDLKSHIRKEHEKQFCLICIKNVVLFPSERKLYNKKELVRHRKDGDADEKSHRGHPECRFCDERYFDNDALLLHLRKSHFWCHFCEHDGKQDYYDVYESLRRHFADQHFLCDEDACANEKFTSVFRDKIDFQAHKLAAHRKKLNKYQAKNARKVDIDYNFGGRSSGASASGGGGSTITGADYEDV-RQSGENRGA-SGGRSAGRSNNNNHRYHREKN 334
            +C++CC D +  ++G CDHP+C++CS +MRVL  Q+YC  CR EL QVV+  +L  F    + ++   +K+ I F    V   +  LL + C  C E P  S+  DL+ H+R++HE   C +C++++ +F  ERK Y++K+L RHR  GD D+ SHRGHP C+FCDERY DND LL HLR+ H++CHFC+ DG QDYY  Y  LR HF ++HFLC+E  C+ E+FT  FR +ID +AH+ A H +  ++ +A+  R +D+ +++  R S  +        + G DYE+V R S + R A +G R A +S   + RY RE+ 
Sbjct:   28 SCVLCCGDLEATALGRCDHPVCYRCSTKMRVLCEQRYCAVCREELRQVVFGKKLPAFATIPIHQLQHEKKYDIYFADGKVYALYRQLLQHECPRCPELPPFSLFGDLEQHMRRQHELFCCRLCLQHLQIFTYERKWYSRKDLARHRMQGDPDDTSHRGHPLCKFCDERYLDNDELLKHLRRDHYFCHFCDSDGAQDYYSDYAYLREHFREKHFLCEEGRCSTEQFTHAFRTEIDLKAHRTACHSR--SRAEARQNRHIDLQFSYAPRHSRRNE-----GVVGGEDYEEVDRYSRQGRVARAGTRGAQQSRRGSWRYKREEE 341

The following BLAST results are available for this feature:

BLAST of TCONS_00015629-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00015629-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ZN598	1.674e-85	42.37	E3 ubiquitin-protein ligase ZNF598 OS=Homo sapiens...	[more]

You are here

TCONS_00015629-protein (polypeptide) - C. hemisphaerica