TCONS_00015601-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00015601-protein
Unique NameTCONS_00015601-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length971

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00015601-protein ID=TCONS_00015601-protein|Name=TCONS_00015601-protein|organism=Clytia hemisphaerica|type=polypeptide|length=971bp
SLYFDRQSGDQETDNYDQRQFVKYRHYRRKSSSESALHRQVRFNNRIKVQ
PIGEVEDGKAFIANQETEQMLHTDEYEQKEEESSCCRISFFERRKDWALY
IFSPKNSARNGAINLVGKQWFDNVVLFFILLNCIIMAIERPSIKDGSIER
KIIDVSNHVFTVVFTIEMFIKIFAAGFYFGEKTTYLKNSWNRIDFVLVII
SLVDIFVTYVVQSKSGVLGVLKVFRAFRTLRPLRVISRAPGLKIVVETLI
HSLVPIGNLLIVGLVFFTIFGILGVQLFKGKFHHCTGLSESDLENVVTKE
DCQNLGGRWSNKKYNFDNLFQALFTLFVFSTKDGWVSLMYDGIDAVGIER
QPKRNANRWAFLYFVAFLLIAGFVVINMVVGVIIDNFQKCRVLVEEEEME
NGHTISSSHPASDEDRPPTDDDDDKNTTIGRASVMPLANSMQSLTTLSSH
GEKAVRRKIMTRLEQNLAAHHKEQQKKAVSFDERQSATNTETEDGFTDDV
SSMKSKTTDDIPEHLDEYSWVRRKIYNFVSHYKFDLVIAIVIGLNVVFMA
IEHNNMSKDLVTFLSILNYIFTAIFILEAIFKIWGFGPRMFFAQRWNQLD
IVIVFLSIIGIIFEELNSELPINPTIIRIMRVLRIARVLKILKAADGIQK
LLNCVTEAIPQVGNLSMLFMLIFFIYSALGIELFGDLDCTRDTCFGISRH
AHFKNFGYALLTLFRVSTGDNWSGLLKDCINQQLCPDGCPMMPYMAPIYY
STFVLASQFVLVNVVVAVLMKQLEDAKDLVSPSNSQASGLNGDLLSPIDE
VSEHLDKGDKNNSFDDGDNIEMLQLHKKRKMKADENEPLLNSNSNDEFDY
SLNANLVSFDDTKETTVQNNDELDGTSIMKSSSSVDSIVDNNRIKEPSFV
PGIRTQNDADQKSGPDNTRNDSDIEDTLNGVLDRVCQQENQDNIQNTDQI
DVAGTVLALSGLRDSVISTCV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_008710XLOC_008710Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00015601TCONS_00015601Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005821Ion_trans_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005216ion channel activity
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO:0006811ion transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
molecular_function GO:0005216 ion channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 62..82
NoneNo IPR availableGENE3D1.10.287.70coord: 117..392
e-value: 7.8E-62
score: 208.0
coord: 530..777
e-value: 4.0E-48
score: 163.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 471..508
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 896..924
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 401..429
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 312..391
coord: 118..281
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 531..774
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 532..778
e-value: 3.4E-48
score: 163.9
coord: 119..391
e-value: 2.0E-66
score: 223.6

Blast
BLAST of TCONS_00015601-protein vs. Swiss-Prot (Human)
Match: CAC1H (Voltage-dependent T-type calcium channel subunit alpha-1H OS=Homo sapiens GN=CACNA1H PE=1 SV=4)

HSP 1 Score: 324.324 bits (830), Expect = 7.800e-93
Identity = 171/326 (52.45%), Postives = 225/326 (69.02%), Query Frame = 0
Query:   75 EYEQKEEESSCCRI---------SFFERRKDWALYIFSPKNSARNGAINLVGKQWFDNVVLFFILLNCIIMAIERPSIKDGSIERKIIDVSNHVFTVVFTIEMFIKIFAAGFYFGEKTTYLKNSWNRIDFVLVIISLVDIFVTYVVQSKSGVLGVLKVFRAFRTLRPLRVISRAPGLKIVVETLIHSLVPIGNLLIVGLVFFTIFGILGVQLFKGKFHHCTGLSESDLENVVTKEDCQNLGGRWSNKKYNFDNLFQALFTLFVFSTKDGWVSLMYDGIDAVGIERQPKRNANRWAFLYFVAFLLIAGFVVINMVVGVIIDNFQKCR 391
            E +   E+S C R+          +   R+ WALY+FSP+N  R     ++  + FD+VVL FI LNC+ +A+ERP I  GS ER  + VSN++FT +F  EM +K+ A G   GE   YL++SWN +D +LV++SLVDI V       + +LGVL+V R  RTLRPLRVISRAPGLK+VVETLI SL PIGN++++   FF IFGILGVQLFKGKF++C G    D  N+ TK  C+    RW  +KYNFDNL QAL +LFV S+KDGWV++MYDG+DAVG+++QP +N N W  LYF++FLLI  F V+NM VGV+++NF KCR
Sbjct: 1241 ELDDDSEDSCCLRLHKVLEPYKPQWCRSREAWALYLFSPQNRFRVSCQKVITHKMFDHVVLVFIFLNCVTIALERPDIDPGSTERVFLSVSNYIFTAIFVAEMMVKVVALGLLSGEHA-YLQSSWNLLDGLLVLVSLVDIVVAMASAGGAKILGVLRVLRLLRTLRPLRVISRAPGLKLVVETLISSLRPIGNIVLICCAFFIIFGILGVQLFKGKFYYCEG---PDTRNISTKAQCRAAHYRWVRRKYNFDNLGQALMSLFVLSSKDGWVNIMYDGLDAVGVDQQPVQNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCR 1562          

HSP 2 Score: 263.848 bits (673), Expect = 9.010e-73
Identity = 153/281 (54.45%), Postives = 200/281 (71.17%), Query Frame = 0
Query:  501 SSMKSKTTDDIPEHLDEYSWVRRKIYNFVSHYKFDLVIAIVIGLNVVFMAIEHNNMSKDLVTFLSILNYIFTAIFILEAIFKIWGFGPRMFFAQRWNQLDIVIVFLSIIGIIFEE--LNSELPINPTIIRIMRVLRIARVLKILKAADGIQKLLNCVTEAIPQVGNLSMLFMLIFFIYSALGIELFGDLDCTRD-TCFGISRHAHFKNFGYALLTLFRVSTGDNWSGLLKDCINQQLCPDG-C-PMMPYMAPIYYSTFVLASQFVLVNVVVAVLMKQLEDA 776
            S+  S      P + D YS  RR I++  + +  DL I  +I +NV+ M++EH N  K L   L   NY+FT +F+ EA  K+  FG R FF  RWNQLD+ IV LS++GI  EE  +++ LPINPTIIRIMRVLRIARVLK+LK A G++ LL+ V +A+PQVGNL +LFML+FFIY+ALG+ELFG L+C+ D  C G+SRHA F NFG A LTLFRVSTGDNW+G++KD + +    D  C   +P ++P+Y+ TFVL +QFVLVNVVVAVLMK LE++
Sbjct: 1587 STFPSPEAQRRPYYAD-YSPTRRSIHSLCTSHYLDLFITFIICVNVITMSMEHYNQPKSLDEALKYCNYVFTIVFVFEAALKLVAFGFRRFFKDRWNQLDLAIVLLSLMGITLEEIEMSAALPINPTIIRIMRVLRIARVLKLLKMATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGRLECSEDNPCEGLSRHATFSNFGMAFLTLFRVSTGDNWNGIMKDTLRECSREDKHCLSYLPALSPVYFVTFVLVAQFVLVNVVVAVLMKHLEES 1866          

HSP 3 Score: 113.62 bits (283), Expect = 2.321e-25
Identity = 77/277 (27.80%), Postives = 139/277 (50.18%), Query Frame = 0
Query:  115 LVGKQWFDNVVLFFILLNCIIMAIE---RPSIKDGSIERKIIDVSNHVFTVVFTIEMFIKIFAAGFYFGEKTTYLKNSWNRIDFVLVIISLVDIFVTYVVQSKSGVLGVLKVFRAFRTLRPLRVISRAPGLKIVVETLIHSLVPIGNLLIVGLVFFTIFGILGVQLFKGKFHHCTGLSESDLENVVTKEDCQNLGGRWSNKKYNFDNLFQALFTLFVFSTKDGWVSLMYDGIDAVGIERQPKRNANRWAFLYFVAFLLIAGFVVINMVVGVIIDNFQ 388
            +V  ++F   ++  IL+N + M +E   +P     ++E     +SN VFT +F +EM +K+ A G        Y++N +N  D ++V+IS+ +I    V Q+  G    L V R FR LR L+++   P L+  +  L+ ++  +     + ++F  IF ILG+ LF  KF       ++D  + V               + NFD+L  A+ T+F   T++ W  ++Y+G+ +           + WA LYFVA +    +V+ N++V ++++ FQ
Sbjct:  789 IVDSKYFSRGIMMAILVNTLSMGVEYHEQPEELTNALE-----ISNIVFTSMFALEMLLKLLACG-----PLGYIRNPYNIFDGIIVVISVWEI----VGQADGG----LSVLRTFRLLRVLKLVRFLPALRRQLVVLVKTMDNVATFCTLLMLFIFIFSILGMHLFGCKFSL-----KTDTGDTVP-------------DRKNFDSLLWAIVTVFQILTQEDWNVVLYNGMAST----------SSWAALYFVALMTFGNYVLFNLLVAILVEGFQ 1019          

HSP 4 Score: 100.908 bits (250), Expect = 1.870e-21
Identity = 94/342 (27.49%), Postives = 165/342 (48.25%), Query Frame = 0
Query:   92 ERRKDWALYIFSPKNSARNGAINLVGKQWFDNVVLFFILLNCIIMAIE---RPSIKDGSIERKIIDVSNHVFTVVFTIEMFIKIFAAGFYFGEKTTYLKNSWNRIDFVLVIISLVDIFVTYVVQSKSGVLG--VLKVFRAFRTLRPLRVISRAPGLKIVVETLIHSLVPIGNLLIVGLVFFTIFGILGVQLFKGKFHHCTGLSESDLENVVTKEDCQNLGGRWSNKKYNFDNLFQALFTLFVFSTKDGWVSLMYDGIDAVGIERQPKRNANRWAFL---YFVAFLLIAGFVVINMVVGVIIDNFQKCRVLVEEE-------EMENGHTISSSHPASDEDRPP 418
            +RR  +A Y     +  R    +L    + D  + F I +N I M++E   +P   D     + +   N+VFT+VF  E  +K+ A GF       + K+ WN++D  +V++SL+ I +  +  S +  +   ++++ R  R  R L+++  A G++ +++T++ +L  +GNL ++ ++ F I+  LGV+LF        G  E   +N      C+ L     ++   F N   A  TLF  ST D W  +M D +      R+ K   +    L   YFV F+L+A FV++N+VV V++ + ++      E+       E+E      S+    D DRPP
Sbjct: 1595 QRRPYYADY-----SPTRRSIHSLCTSHYLDLFITFIICVNVITMSMEHYNQPKSLD-----EALKYCNYVFTIVFVFEAALKLVAFGF-----RRFFKDRWNQLDLAIVLLSLMGITLEEIEMSAALPINPTIIRIMRVLRIARVLKLLKMATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELF--------GRLECSEDN-----PCEGL-----SRHATFSNFGMAFLTLFRVSTGDNWNGIMKDTLREC--SREDKHCLSYLPALSPVYFVTFVLVAQFVLVNVVVAVLMKHLEESNKEAREDAELDAEIELEMAQGPGSAR-RVDADRPP 1900          

HSP 5 Score: 98.9821 bits (245), Expect = 8.987e-21
Identity = 67/270 (24.81%), Postives = 128/270 (47.41%), Query Frame = 0
Query:  517 EYSWVRR-------KIYNFVSHYKFDLVIAIVIGLNVVFMAIEHNNMSKDLVTFLSILNYIFTAIFILEAIFKIWGFGPRMFFAQRWNQLDIVIVFLSIIGIIFEELNSELPINPTIIRIMRVLRIARVLKILKAADGIQKLLNCVTEAIPQVGNLSMLFMLIFFIYSALGIELFG-DLDCTRDTCFGISRHAHFKNFGYALLTLFRVSTGDNWSGLLKDCINQQLCPDGCPMMPYMAPIYYSTFVLASQFVLVNVVVAVLMKQLEDAKD 778
            E  W+ R       K+   V    F   I + I +N + M +E++   ++L   L I N +FT++F LE + K+   GP  +    +N  D +IV +S+  I+ +            + ++R  R+ RVLK+++    +++ L  + + +  V     L ML  FI+S LG+ LFG       DT   +    +F +  +A++T+F++ T ++W+ +L          +G       A +Y+   +    +VL N++VA+L++  +   D
Sbjct:  771 EPGWMGRLWVTFSGKLRRIVDSKYFSRGIMMAILVNTLSMGVEYHEQPEELTNALEISNIVFTSMFALEMLLKLLACGPLGYIRNPYNIFDGIIVVISVWEIVGQADGG--------LSVLRTFRLLRVLKLVRFLPALRRQLVVLVKTMDNVATFCTLLMLFIFIFSILGMHLFGCKFSLKTDTGDTVPDRKNFDSLLWAIVTVFQILTQEDWNVVLY---------NGMASTSSWAALYFVALMTFGNYVLFNLLVAILVEGFQAEGD 1023          

HSP 6 Score: 92.8189 bits (229), Expect = 5.683e-19
Identity = 63/174 (36.21%), Postives = 100/174 (57.47%), Query Frame = 0
Query:  109 RNGAINLVGKQWFDNVVLFFILLNCIIMAIERPS--IKDGSIERKIIDVSNHVFTVVFTIEMFIKIFAAGFYFGEKTTYLKNSWNRIDFVLVIISLVDIFVTYVVQSKSGVLGVLKVFRAFRTLRPLRVISRAPGLKIVVETLIHSLVPIGNLLIVGLVFFTIFGILGVQLFKG 280
            R+  + LV   WF++V +  I+LNC+ + + RP   ++ GS    I++  +      F +EM IK+ A G  FG+K  YL ++WNR+DF +V+  +++        S  G    L   R  R LRPLR I+R P ++I+V  L+ +L  +GN+L++    F IFGI+GVQL+ G
Sbjct:   90 RSWCLRLVCNPWFEHVSMLVIMLNCVTLGMFRPCEDVECGSERCNILEAFDAFIFAFFAVEMVIKMVALGL-FGQKC-YLGDTWNRLDFFIVVAGMMEY-------SLDGHNVSLSAIRTVRVLRPLRAINRVPSMRILVTLLLDTLPMLGNVLLLCFFVFFIFGIVGVQLWAG 254          

HSP 7 Score: 87.4261 bits (215), Expect = 2.511e-17
Identity = 74/281 (26.33%), Postives = 142/281 (50.53%), Query Frame = 0
Query:  522 RRKIYNFVSHYKFDLVIAIVIGLNVVFMAIEHNNMSKDLV--TFLSILNYIFTAIFILEAIFKIWGFG----PRMFFAQRWNQLDIVIVFLSIIGIIFEELNSELPINPTIIRIMRVLRIARVLKILKAADGIQKLLNCVTEAIPQVGNLSMLFMLIFFIYSALGIELFGD--LDC---------TRDTCFG-----ISRHAHFKNFGYALLTLFRVSTGDNWSGLLKDCINQQLCPDGCPMM---PYMAPIYYSTFVLASQFVLVNVVVAVLMKQLEDAK 777
            R      ++H  FD V+ + I LN V +A+E  ++        FLS+ NYIFTAIF+ E + K+   G       +    WN LD ++V +S++ I+    ++       ++R++R+LR  R L+++  A G++ ++  +  ++  +GN+ ++    F I+  LG++LF      C         T+  C       + R  +F N G AL++LF +S+ D W  ++ D ++  +  D  P+    P+M  +Y+ +F+L   F ++N+ V V+++     +
Sbjct: 1284 RVSCQKVITHKMFDHVVLVFIFLNCVTIALERPDIDPGSTERVFLSVSNYIFTAIFVAEMMVKVVALGLLSGEHAYLQSSWNLLDGLLVLVSLVDIVVAMASAGGAKILGVLRVLRLLRTLRPLRVISRAPGLKLVVETLISSLRPIGNIVLICCAFFIIFGILGVQLFKGKFYYCEGPDTRNISTKAQCRAAHYRWVRRKYNFDNLGQALMSLFVLSSKDGWVNIMYDGLD-AVGVDQQPVQNHNPWML-LYFISFLLIVSFFVLNMFVGVVVENFHKCR 1562          
The following BLAST results are available for this feature:
BLAST of TCONS_00015601-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CAC1H7.800e-9352.45Voltage-dependent T-type calcium channel subunit a... [more]
back to top