TCONS_00015102-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00015102-protein
Unique NameTCONS_00015102-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length148

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00015102-protein ID=TCONS_00015102-protein|Name=TCONS_00015102-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
MAAMSLACGFRNFAFRSSVPELQIVAGLNTSVPACFPKYHNVKKKVRIHR
EKMDAMKLKFDRLDVEDKPTGCILCPHKNTDIQIDYKNVRLLSQFVSPNT
GRIYGRKITGLCDKKQKEVTNAINRARRIGLMPITMKYFDFHEDPKLF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_008464XLOC_008464Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00015102TCONS_00015102Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001648Ribosomal_S18
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001648Ribosomal protein S18TIGRFAMTIGR00165TIGR00165coord: 74..135
e-value: 3.4E-15
score: 54.0
IPR001648Ribosomal protein S18PFAMPF01084Ribosomal_S18coord: 82..132
e-value: 5.5E-23
score: 80.8
IPR001648Ribosomal protein S18GENE3D4.10.640.10coord: 72..138
e-value: 9.3E-26
score: 89.2
IPR001648Ribosomal protein S18PRODOMPD002239coord: 83..133
e-value: 4.0E-15
score: 195.0
IPR001648Ribosomal protein S18SUPERFAMILY46911Ribosomal protein S18coord: 72..139

Blast
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BLAST of TCONS_00015102-protein vs. Swiss-Prot (Human)
Match: RT18C (28S ribosomal protein S18c, mitochondrial OS=Homo sapiens GN=MRPS18C PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.871e-24
Identity = 46/76 (60.53%), Postives = 55/76 (72.37%), Query Frame = 0 
Query:   72 CILCPHKNTDIQIDYKNVRLLSQFVSPNTGRIYGRKITGLCDKKQKEVTNAINRARRIGLMPITMKYFDFHEDPKL 147
            CILC        +DYKNV+LLSQFVSP TG IYGR ITGLC KKQKE+T AI RA+ +G MP+T K   + +DPK+
Sbjct:   65 CILC-----GKHVDYKNVQLLSQFVSPFTGCIYGRHITGLCGKKQKEITKAIKRAQIMGFMPVTYKDPAYLKDPKV 135
The following BLAST results are available for this feature:
BLAST of TCONS_00015102-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RT18C4.871e-2460.5328S ribosomal protein S18c, mitochondrial OS=Homo ... [more]
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