Zn-finger transcription factor (polypeptide) - C. hemisphaerica

Overview
NameZn-finger transcription factor
Unique NameTCONS_00015065-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length368

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00015065-protein ID=TCONS_00015065-protein|Name=Zn-finger transcription factor|organism=Clytia hemisphaerica|type=polypeptide|length=368bp
MSPPSRSSTVATSFLLPPHQLFEHNKHSPLAMLAATCKKIGRPNSPPDTE
YQPPAKKLFQPWNHTSQAPLSPTSKVRSYLESTNFSMPPSPPLKPDLVKP
AFGTSETTAFTSHAPTTLRVPSPPCSACAASQRCPQPLPKRMSPIPTLTP
PSSPPSTIRPSLWTLPSPYSVRTLENSSTVAPSTITSPTIVRPSPYPITS
SAGNPPPTTAVAPQVPTSVTRRCRRCKCPNCLSGQPSEPNKPKQHLCHIP
GCGKVYGKTSHLKAHLRWHAGLRPFVCNWLFCNKSFTRSDELQRHLRTHT
GEKRFACQECGKRFTRSDHLSKHMKTHQNKAAKDKTQQQKQQSQQQSRPV
VQETPTDIEIDEDINVEN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_008429XLOC_008429Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00015065TCONS_00015065Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 305..327
e-value: 2.7E-4
score: 30.3
coord: 275..299
e-value: 2.3E-4
score: 30.5
coord: 245..269
e-value: 6.9
score: 14.7
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 247..269
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 307..327
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 277..299
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 275..304
score: 15.293
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 245..274
score: 12.487
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 305..332
score: 14.149
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 242..286
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 273..327
NoneNo IPR availableGENE3D3.30.160.60coord: 308..355
e-value: 5.1E-15
score: 54.7
NoneNo IPR availableGENE3D3.30.160.60coord: 256..270
e-value: 1.8E-5
score: 24.5
NoneNo IPR availablePFAMPF00096zf-C2H2coord: 275..299
e-value: 3.2E-6
score: 27.2
coord: 247..269
e-value: 0.0069
score: 16.7
coord: 305..327
e-value: 3.0E-6
score: 27.3
NoneNo IPR availableGENE3D3.30.160.60coord: 271..289
e-value: 2.7E-14
score: 52.4
NoneNo IPR availableGENE3D3.30.160.60coord: 195..255
e-value: 0.011
score: 15.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 318..368
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 290..307
e-value: 3.3E-9
score: 36.3

Blast
[Close]
BLAST of Zn-finger transcription factor vs. Swiss-Prot (Human)
Match: SP4 (Transcription factor Sp4 OS=Homo sapiens GN=SP4 PE=1 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 3.798e-60
Identity = 97/160 (60.62%), Postives = 107/160 (66.88%), Query Frame = 0 
Query:  179 TVAPSTITSPTIVRPSPYPITS---SAGNPPPTTAVAPQVPTSVTRRCRR--CKCPNCLSGQP---SEPNKPKQHLCHIPGCGKVYGKTSHLKAHLRWHAGLRPFVCNWLFCNKSFTRSDELQRHLRTHTGEKRFACQECGKRFTRSDHLSKHMKTHQNK 330
            TVA   I + TI   SP  +T      G       V P       +R RR  C CPNC  G+    +EP K KQH+CHI GCGKVYGKTSHL+AHLRWH G RPF+CNW+FC K FTRSDELQRH RTHTGEKRF C EC KRF RSDHLSKH+KTHQNK
Sbjct:  579 TVAVGGIANATIGAVSPDQLTQVHLQQGQQTSDQEVQP------GKRLRRVACSCPNCREGEGRGSNEPGKKKQHICHIEGCGKVYGKTSHLRAHLRWHTGERPFICNWMFCGKRFTRSDELQRHRRTHTGEKRFECPECSKRFMRSDHLSKHVKTHQNK 732
The following BLAST results are available for this feature:
BLAST of Zn-finger transcription factor vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SP43.798e-6060.63Transcription factor Sp4 OS=Homo sapiens GN=SP4 PE... [more]
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