TCONS_00015061-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00015061-protein
Unique NameTCONS_00015061-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length766

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00015061-protein ID=TCONS_00015061-protein|Name=TCONS_00015061-protein|organism=Clytia hemisphaerica|type=polypeptide|length=766bp
MDDEFEAETDTKTRRLPKMAKVKNKAPAPVQITAEQLLREAKERQLEIVP
PPPKQKITDPAELQEYRLRKRKFFEDQLRKNRTSVSNWLKYAAWEESQKE
IQRSRSIYERGLDMNHRCVTIWLKYAEMEMKLRQINHARNIWDRAVTILP
RVNQFWYKYTYMEEMLGNIPGCRQVFERWMEWEPEEQAWLSYIKMELRYK
EVDRARAIYEGFIMCHPVVKNWIRFARFEEGHGNPGNARIVYERSVEFYG
DDNMEEALFIAFARFEENQREFDRVRAIYKYALDKIPKQNAQELFKNYST
FEKRFGDRSGIENVIISKRRFQYEEEVKSNPNNYDAWFDYVRLMESDSED
WQTIRDVYERAISNIPPVHEKKHWRRYIYLWIMYALFEELTAKDAERTRQ
VYKACLEVIPHKKFTFAKIWIMYAQFEVRQKNLKVARLTLGSSIGKCPKD
KLYREYISLELQLREFNRCRKLYEKFLEFNPANCTTWIKYAEMETILGDT
SRARSIYELAIAQTLLDMPEVLWKAYIDFEIEQEEFERTRDLYERLLKKT
QHVKVWISYAQFEIGTDEEYCVENARTVYRKADQSLRSEEQKEERMLLLE
AWRKFEYEKGDSTSQSSIERMMPRKVKKRRKVESEDQADSGWEEYYDYIF
PDEKDNQPNFKLLQMAKMWKQTKDSDSDSNSGDNEEGGEENEEAKDTKSD
GEETNNKKKIISSSSSSSSDDSDGEDENEDSEEKQTLPLPLNLKDLDKDE
NFSDDSSSSSDSDDEN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_008426XLOC_008426Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00015061TCONS_00015061Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003107HAT
IPR011990TPR-like_helical_dom
IPR013026TPR-contain_dom
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006396 RNA processing
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 572..592
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 671..766
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 613..636
IPR003107HAT (Half-A-TPR) repeatSMARTSM00386hat_new_1coord: 65..97
e-value: 0.48
score: 19.5
coord: 498..532
e-value: 1.7E-4
score: 31.0
coord: 99..131
e-value: 1.3E-7
score: 41.3
coord: 133..165
e-value: 2.7E-4
score: 30.3
coord: 393..429
e-value: 1.8E-6
score: 37.5
coord: 200..231
e-value: 5.7E-5
score: 32.5
coord: 270..304
e-value: 4.6E-4
score: 29.5
coord: 167..198
e-value: 1.5E-4
score: 31.2
coord: 314..346
e-value: 190.0
score: 6.1
coord: 349..383
e-value: 3.6E-5
score: 33.2
coord: 431..462
e-value: 100.0
score: 7.9
coord: 464..496
e-value: 0.013
score: 24.7
coord: 534..565
e-value: 6.3E-6
score: 35.7
coord: 233..268
e-value: 0.0033
score: 26.7
IPR003107HAT (Half-A-TPR) repeatPFAMPF02184HATcoord: 99..129
e-value: 4.5E-5
score: 23.2
coord: 200..230
e-value: 3.2E-15
score: 55.7
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 322..453
e-value: 9.1E-22
score: 76.9
coord: 527..628
e-value: 1.4E-10
score: 40.6
coord: 195..315
e-value: 3.7E-13
score: 48.9
coord: 454..526
e-value: 2.2E-14
score: 52.9
coord: 73..194
e-value: 6.9E-20
score: 70.8
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 75..518
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 521..619
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 85..186
score: 10.136
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 450..517
score: 7.711

Blast
[Close]
BLAST of TCONS_00015061-protein vs. Swiss-Prot (Human)
Match: CRNL1 (Crooked neck-like protein 1 OS=Homo sapiens GN=CRNKL1 PE=1 SV=4)

HSP 1 Score: 1027.31 bits (2655), Expect = 0.000e+0
Identity = 473/676 (69.97%), Postives = 588/676 (86.98%), Query Frame = 0 
Query:   14 RRLPKMAKVKNKAPAPVQITAEQLLREAKERQLEIVPPPPKQKITDPAELQEYRLRKRKFFEDQLRKNRTSVSNWLKYAAWEESQKEIQRSRSIYERGLDMNHRCVTIWLKYAEMEMKLRQINHARNIWDRAVTILPRVNQFWYKYTYMEEMLGNIPGCRQVFERWMEWEPEEQAWLSYIKMELRYKEVDRARAIYEGFIMCHPVVKNWIRFARFEEGHGNPGNARIVYERSVEFYGDDNMEEALFIAFARFEENQREFDRVRAIYKYALDKIPKQNAQELFKNYSTFEKRFGDRSGIENVIISKRRFQYEEEVKSNPNNYDAWFDYVRLMESDSEDWQTIRDVYERAISNIPPVHEKKHWRRYIYLWIMYALFEELTAKDAERTRQVYKACLEVIPHKKFTFAKIWIMYAQFEVRQKNLKVARLTLGSSIGKCPKDKLYREYISLELQLREFNRCRKLYEKFLEFNPANCTTWIKYAEMETILGDTSRARSIYELAIAQTLLDMPEVLWKAYIDFEIEQEEFERTRDLYERLLKKTQHVKVWISYAQFEIGTDEEYCVENARTVYRKADQSLRSEEQKEERMLLLEAWRKFEYEKGDSTSQSSIERMMPRKVKKRRKVESEDQADSGWEEYYDYIFPDEKDNQPNFKLLQMAKMWKQTKDSDSDSNSGDNEEGGE 689
            +R+PK+AKVKNKAPA VQITAEQLLREAKER+LE++PPPP+QKITD  EL +Y+LRKRK FED +RKNRT +SNW+KYA WEES KEIQR+RSIYER LD+++R +T+WLKYAEMEMK RQ+NHARNIWDRA+T LPRVNQFWYKYTYMEEMLGN+ G RQVFERWMEW+PEEQAW SYI  ELRYKEVDRAR IYE F++ HP VKNWI++ARFEE H    +AR VYER+VEF+GD++M+E L++AFA+FEENQ+EF+RVR IYKYALD+I KQ+AQELFKNY+ FEK+FGDR GIE++I+SKRRFQYEEEVK+NP+NYDAWFDY+RL+ESD+E  + +R+VYERAI+N+PP+ EK+HW+RYIYLWI YAL+EEL AKD ERTRQVY+A LE+IPHKKFTFAK+WI+YAQFE+RQKNL +AR  LG+SIGKCPK+KL++ YI LELQLREF+RCRKLYEKFLEF P NCT+WIK+AE+ETILGD  RAR+IYELAI+Q  LDMPEVLWK+YIDFEIEQEE ERTR+LY RLL++TQHVKVWIS+AQFE+ + +E  +   R +Y +A++++R+ E+KEER++LLE+WR FE E G ++ +  ++++MP KVKKRRKV+++D +D+GWEEY+DYIFP++  NQPN KLL MAK+WK+ +    D+    +E+  E
Sbjct:  171 QRIPKVAKVKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDYKLRKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYINFELRYKEVDRARTIYERFVLVHPDVKNWIKYARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQDAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEA-EAVREVYERAIANVPPIQEKRHWKRYIYLWINYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWILYAQFEIRQKNLSLARRALGTSIGKCPKNKLFKVYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIDRARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYRRLLQRTQHVKVWISFAQFELSSGKEGSLTKCRQIYEEANKTMRNCEEKEERLMLLESWRSFEEEFGTASDKERVDKLMPEKVKKRRKVQTDDGSDAGWEEYFDYIFPEDAANQPNLKLLAMAKLWKKQQQEKEDAEHHPDEDVDE 845
The following BLAST results are available for this feature:
BLAST of TCONS_00015061-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CRNL10.000e+069.97Crooked neck-like protein 1 OS=Homo sapiens GN=CRN... [more]
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