TCONS_00014973-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00014973-protein
Unique Name	TCONS_00014973-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	418

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00014973-protein ID=TCONS_00014973-protein|Name=TCONS_00014973-protein|organism=Clytia hemisphaerica|type=polypeptide|length=418bp
MKLKYFASSIIQFGIINTANAQLDTQISHLGQNETCFRPTLDNFPKDLFS
EEDRMKGAIAVHWVVAIYIFSILSLLIQAYVIGAIKTMADSFRIASEAAR
NTMVVGGQLLPEFFASLIGMFVSKQNLGAATVIGSCAANSLLTLGVVGLT
LPNPVKLSWYPLWRDNIFYLFTVTVLLWTTYDHELKWQECTFLVLFYLLY
LLIINFNHKVERGVRRLVLMYRTGDDEAEADQEIEKTPMIERKRMFERRS
SKVVVDQTIPEENSDDISGDHLNLDISLKDEDTFSLHNEHMEHDGISLCT
EDGYISAGGYGYASDGGYLSERGYHSERGYGSINPAYLSDAKEGYASEGD
CLVNTPRQDYSQRHVSKFAQHTQRMTHRLKRKLVQGSYYTTLDMDQYIDG
PLSPXKALITLHLIWISI

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_008369	XLOC_008369	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00014973	TCONS_00014973	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR004837	NaCa_Exmemb

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004837	Sodium/calcium exchanger membrane region	PFAM	PF01699	Na_Ca_ex	coord: 63..203 e-value: 2.8E-14 score: 53.2

Blast

[Close]

BLAST of TCONS_00014973-protein vs. Swiss-Prot (Human)
Match: NCKX3 (Sodium/potassium/calcium exchanger 3 OS=Homo sapiens GN=SLC24A3 PE=2 SV=4)

HSP 1 Score: 145.591 bits (366), Expect = 4.084e-38
Identity = 77/246 (31.30%), Postives = 137/246 (55.69%), Query Frame = 0

Query:   20 NAQLDTQISHLGQNETCFRPTLDNFPKDLFSEEDRMKGAIAVHWVVAIYIFSILSLLIQAYVIGAIKTMADSFRIASEAARNTMVVGGQLLPEFFASLIGMFVSKQNLGAATVIGSCAANSLLTLGVVGLTLPNPVKLSWYPLWRDNIFYLFTVTVLLWTTYDHELKWQECTFLVLFYLLYLLIINFNHKV----ERGVRRLVLMYRTGDDEAEAD--QEIEKTPMIERKRMFERRSSKVVVDQTI 259
            N  L ++ + L  ++ C  P L  FP D+F+ EDR +GA+ +H + AIY+F  L+++   + + +++ + +   ++ + A  T +  G   PE F S+IG+F++K ++G  T++GS   N L  +GV GL     V LS + L RD+I+Y  +V  L+   YD ++ W E   LVL YL+Y++I+ +N  +    ER  +    M     + AE D     + T ++ +K  F R++S ++VD+ +
Sbjct:   71 NDTLTSEDAGLRNSKNCTEPALHEFPNDIFTNEDRRQGAVVLHVLCAIYMFYALAIVCDDFFVPSLEKICERLHLSEDVAGATFMAAGSSAPELFTSVIGVFITKGDVGVGTIVGSAVFNILCIIGVCGLFAGQVVALSSWCLLRDSIYYTLSVIALIVFIYDEKVSWWESLVLVLMYLIYIVIMKYNACIHQCFERRTKGAGNMVNGLANNAEIDDSSNCDATVVLLKKANFHRKASVIMVDELL 316

The following BLAST results are available for this feature:

BLAST of TCONS_00014973-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00014973-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NCKX3	4.084e-38	31.30	Sodium/potassium/calcium exchanger 3 OS=Homo sapie...	[more]

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TCONS_00014973-protein (polypeptide) - C. hemisphaerica