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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00014913-protein ID=TCONS_00014913-protein|Name=TCONS_00014913-protein|organism=Clytia hemisphaerica|type=polypeptide|length=672bp
MSFNNGRQFHNNDNRFGTRQSPDWRNQNQNNSGNFDLLGSLGFGNFQNFD
RVGNFDRPLDFHNRPTGNFNRPGGNFEQGRHYPRHNDRPVGQYRDFDRFA
PPEKRMRNEPPMRRFDDNFSPSFHNHQASPRQGNPPQKGPKPRNSFEKFN
NIEEFKEHRRHLQERKSLEERRDSEPNRETDSEFIFIGPNDIKELKDDIY
LALRRKPSDSVSQEVSEICRVFSRLQFHLSFRDYSEAKEYSKKKSQPPKQ
STFYSCKNCDCYFSTPNVLDIHVNTKFHQQVSKIYNEVAIIGKEYLQVYE
KPATFQINTPISEKVGILVCLKEEKIDLAQLDVKKLDENAFVLAALEKRM
AFLWPHPKSQYFCRCCNYSEFPNQAMLDRHQKSARHLDFDRHYNEAFCIV
CQYHYGDETKMKEHQKTKEHDKASHLMDFTKKQASEYWKYWHNKDEKDIP
KNQSVVVNGSTNEQIERIKQECVLIKGDSYAKKDESTSLRVPFVETSEAS
KSSLKHLEDCSTAVSPQKSNQISTTTDSSHGVVDLTSPVKNPRSNTAESL
VIAGSITNTPPSETVACSETENKININENQDENKPKDTAELDIEKYKEYV
FQKNTTPTKLVEDEKPAVEVKEEKEFDEYIVPLTGYMCTVCHETLADKEE
AKSHKDTNGHKSKVKTHELLFG Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
| IPR003604 | Matrin/U1-like-C_Znf_C2H2 |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
| GO:0008270 | zinc ion binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 152..172 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 251..372
e-value: 1.6E-4
score: 21.2
coord: 373..405
e-value: 0.16
score: 11.6
coord: 406..661
e-value: 0.0011
score: 18.6 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 512..542 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 650..672 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..32 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 63..181 |
| IPR013087 | Zinc finger C2H2-type | SMART | SM00355 | c2h2final6 | coord: 636..660
e-value: 13.0
score: 12.2
coord: 254..278
e-value: 8.0
score: 14.1
coord: 361..386
e-value: 16.0
score: 11.6
coord: 396..420
e-value: 8.4
score: 14.0 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 256..278 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 638..660 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 250..288 |
| IPR003604 | Matrin/U1-C-like, C2H2-type zinc finger | SMART | SM00451 | ZnF_U1_5 | coord: 633..667
e-value: 0.57
score: 14.2
coord: 251..285
e-value: 0.61
score: 13.9 |
Blast
The following BLAST results are available for this feature:
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