TCONS_00014801-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00014801-protein
Unique Name	TCONS_00014801-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	713

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00014801-protein ID=TCONS_00014801-protein|Name=TCONS_00014801-protein|organism=Clytia hemisphaerica|type=polypeptide|length=713bp
MDPQHISNLFLNTLEPSPETRGQAEAQLTEISTTPGFLPVALQLIVSEQI
PVAVRQAAVIYFKNMVCKYWREYDPEIAGIEKKYQIPVEDKSFVRDKIVE
AVLTATELVRVQLTVAIHDMISCDFPEKWPDLVNRINGYLTSDVKETWLG
ALLVLYQLVKKYEFKTKEDRGTIEEIMNVFLPILHSRCASWVKDDSLESY
LLITKVFKIFRALIQLHLPLNIINQNNFPQWMGLFKTVLEKPVPEASLQY
DEDDRSQLSWWKAKKWAITVLHKVFERYGCPGSEEKEFSKFADFYDKNYS
EQVTGLMLKILDAHRKQTYIAPRVLQQCLSYLNQGVYNARSWKLVKPHFQ
EIFKDILFPLMCHSEEDEALWLDDPQEYIRIKYDIFEEYMFFSPSATAKS
YLKEAAQKRKNVLTDIIAYINEILNLDASQRNPKHKDGALHVLGSLAELL
SKKKAYKGHIEQLLAQHVAPEFHSPLGFLRARACWVVQQFAIISFKDDNT
LALLFNSVLQGLTDKDLPVQVEAGIALRQLMSEQEEAAESLVRPHVKGLV
QQILHILKESENDELTNTISKLVQNFPEEVTQISLELVHTLTETFNNLVE
SDEDYDSKSVTAMGILETIENIVGELDGAPEIMIQIEQIVVGLIQSVLKK
ELMEYYEEVFALINECTTVQVSPVMWNVLFLLMETFHNDTADYFTGKIFP
RIVLNELNKMLPG

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_008279	XLOC_008279	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00014801	TCONS_00014801	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001494	Importin-beta_N
IPR013713	Cse1
IPR011989	ARM-like
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0008536	Ran GTPase binding
GO:0005488	binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006886	intracellular protein transport

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
molecular_function	GO:0005488	binding
molecular_function	GO:0008536	Ran GTPase binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 446..466
IPR001494	Importin-beta, N-terminal domain	SMART	SM00913	IBN_N_2	coord: 24..104 e-value: 8.7E-13 score: 58.5
IPR001494	Importin-beta, N-terminal domain	PFAM	PF03810	IBN_N	coord: 24..103 e-value: 3.2E-16 score: 58.9
IPR001494	Importin-beta, N-terminal domain	PROSITE	PS50166	IMPORTIN_B_NT	coord: 24..104 score: 20.816
IPR013713	Exportin/Importin, Cse1-like	PFAM	PF08506	Cse1	coord: 202..448 e-value: 4.3E-6 score: 25.7
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 1..703 e-value: 1.1E-72 score: 245.0
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 4..688

Blast

[Close]

BLAST of TCONS_00014801-protein vs. Swiss-Prot (Human)
Match: IPO7 (Importin-7 OS=Homo sapiens GN=IPO7 PE=1 SV=1)

HSP 1 Score: 622.468 bits (1604), Expect = 0.000e+0
Identity = 316/701 (45.08%), Postives = 461/701 (65.76%), Query Frame = 0

Query:    1 MDPQHISNLFLNTLEPSPETRGQAEAQLTEISTTPGFLPVALQLIVSEQIPVAVRQAAVIYFKNMVCKYW--REYDPEIAGIEKKYQIPVEDKSFVRDKIVEAVLTATELVRVQLTVAIHDMISCDFPEKWPDLVNRINGYLTSDVKETWLGALLVLYQLVKKYEFKTKEDRGTIEEIMNVFLPILHSRCASWVKDDSLESYLLITKVFKIFRALIQLHLPLNIINQNNFPQWMGLFKTVLEKPVPEASLQYDEDDRSQLSWWKAKKWAITVLHKVFERYGCPGSEEKEFSKFADFYDKNYSEQVTGLMLKILDAHRKQTYIAPRVLQQCLSYLNQGVYNARSWKLVKPHFQEIFKDILFPLMCHSEEDEALWLDDPQEYIRIKYDIFEEYMFFSPSATAKSYLKEAAQKRKNVLTDIIAYINEILNLDASQRNPKHKDGALHVLGSLAELLSKKKAYKGHIEQLLAQHVAPEFHSPLGFLRARACWVVQQFAIISFKDDNTLALLFNSVLQGLT-DKDLPVQVEAGIALRQLMSEQEEAAESLVRPHVKGLVQQILHILKESENDELTNTISKLVQNFPEEVTQISLELVHTLTETFNNLVES---DEDYDSKSVTAMGILETIENIVGELDGAPEIMIQIEQIVVGLIQSVLKKELMEYYEEVFALINECTTVQVSPVMWNVLFLLMETFHNDTADYFT 695
            MDP  I      T++P+   R  AE QL E   +  F+   LQ+ +SEQ+ + VRQA VIY KNM+ +YW  RE  P   G    Y IP ED+  +R+ IVEA++ + EL+RVQLT  IH +I  D+P +W  +V++I  YL SD    WLG LL LYQLVK YE+K  E+R  +   M  FLP+L  R    + D S +S L+  ++FKIF AL+Q  LPL +INQ N  +W+ + KTV+ + VP  +LQ +EDDR +L WWK KKWA+ +L ++FERYG PG+  KE+++FA+ + K ++  V  ++LK+L  ++++ Y+APRVLQQ L+Y+NQGV +A +WK +KPH Q I +D++FPLMC+++ DE LW +DP EYIR+K+D+FE+  F SP+  A++ L  A  KRK VL   + +  +IL       +P+ KDGALH++GSLAE+L KKK YK  +E +L  HV P F S LG++RARACWV+  F  + FK D  L        + L  D+++PV+VEA IAL+ L+S QE+A E  + P ++ ++Q +LHI++E+END+LTN I K++  + EEVT I++E+   L  TFN ++++   +E  D K+VTAMGIL TI+ ++  ++   EI  Q+E I + +I +VL++ ++E+YEE+F+L +  T  QVSP MW +L L+ E F  D  DYFT
Sbjct:    1 MDPNTIIEALRGTMDPA--LREAAERQLNEAHKSLNFVSTLLQITMSEQLDLPVRQAGVIYLKNMITQYWPDRETAP---GDISPYTIPEEDRHCIRENIVEAIIHSPELIRVQLTTCIHHIIKHDYPSRWTAIVDKIGFYLQSDNSACWLGILLCLYQLVKNYEYKKPEERSPLVAAMQHFLPVLKDRFIQLLSDQSDQSVLIQKQIFKIFYALVQYTLPLELINQQNLTEWIEILKTVVNRDVPNETLQVEEDDRPELPWWKCKKWALHILARLFERYGSPGNVSKEYNEFAEVFLKAFAVGVQQVLLKVLYQYKEKQYMAPRVLQQTLNYINQGVSHALTWKNLKPHIQGIIQDVIFPLMCYTDADEELWQEDPYEYIRMKFDVFED--FISPTTAAQTLLFTACSKRKEVLQKTMGFCYQILT--EPNADPRKKDGALHMIGSLAEILLKKKIYKDQMEYMLQNHVFPLFSSELGYMRARACWVLHYFCEVKFKSDQNLQTALELTRRCLIDDREMPVKVEAAIALQVLISNQEKAKE-YITPFIRPVMQALLHIIRETENDDLTNVIQKMICEYSEEVTPIAVEMTQHLAMTFNQVIQTGPDEEGSDDKAVTAMGILNTIDTLLSVVEDHKEITQQLEGICLQVIGTVLQQHVLEFYEEIFSLAHSLTCQQVSPQMWQLLPLVFEVFQQDGFDYFT 691

The following BLAST results are available for this feature:

BLAST of TCONS_00014801-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00014801-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
IPO7	0.000e+0	45.08	Importin-7 OS=Homo sapiens GN=IPO7 PE=1 SV=1	[more]

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TCONS_00014801-protein (polypeptide) - C. hemisphaerica