TCONS_00014720-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00014720-protein
Unique NameTCONS_00014720-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length550

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00014720-protein ID=TCONS_00014720-protein|Name=TCONS_00014720-protein|organism=Clytia hemisphaerica|type=polypeptide|length=550bp
MSHQRDGPMAEWLNAWERSGEPPSTRMAIHNEKELSDLLDFSAMFTPPTN
SNTVTKTNTNSPPAHQNTTTDPSAAVSRAGIEEPSWTTYEPRNYEGNTPA
PLLAHENADISSSRKPITTTFSPTGSKKDPFSTTMLFTNRSQPLSSYPEN
SSSPDSSRRYKTSSNKSHSQFRSVYSPTSDDLIPGETPLQYPSPKGALYG
DYYLAEHGSPDPWGHHMTSSRPPPTISAVYSSLPPEIPGSATSQSTAQFM
QASPTIQTAPPRVTDSSVQPPPANGGSTQTADALGKALASNRMQESLDDA
IWVLKSHAESTSQRNQNMPPNAQYPSTPQFPPGLTDQLQNLQNSVLDTPG
GLEASTAALLNSMNTIREGGMLGSEKKSKVKVEGKGKKRSKDSIDDDLND
EPGNEETGGTKVVRESERRHANNARERIRVRDINEAFKELGRMCSLHLKN
ESPQTKLTILHQAVTIITSLESQVRERNLNPKAACLKRRGDEEKMNDDVS
EKRMNMNGSFDGSKRPGNKKPQQVRRTGFPTDQLDGSVQPMVPDAGIFSH
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_008234XLOC_008234Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00014720TCONS_00014720Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046983 protein dimerization activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSMARTSM00353finuluscoord: 423..476
e-value: 3.5E-10
score: 49.8
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainGENE3D4.10.280.10coord: 404..484
e-value: 4.5E-12
score: 45.3
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 418..471
e-value: 3.8E-9
score: 36.3
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROSITEPS50888BHLHcoord: 417..470
score: 13.383
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainCDDcd00083HLHcoord: 415..475
e-value: 5.57948E-9
score: 51.8311
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSUPERFAMILY47459HLH, helix-loop-helix DNA-binding domaincoord: 409..476
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 369..421
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 308..335
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..281
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 489..550

Blast
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BLAST of TCONS_00014720-protein vs. Swiss-Prot (Human)
Match: HTF4 (Transcription factor 12 OS=Homo sapiens GN=TCF12 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.871e-40
Identity = 78/116 (67.24%), Postives = 89/116 (76.72%), Query Frame = 0 
Query:  380 VKVEGKGKKRSKDSIDDDLNDEPGNEETGGTKVVRESERRHANNARERIRVRDINEAFKELGRMCSLHLKNESPQTKLTILHQAVTIITSLESQVRERNLNPKAACLKRRGDEEKM 495
            +KV  +G+  S +  D+DLN E         K+ RE ERR ANNARER+RVRDINEAFKELGRMC LHLK+E PQTKL ILHQAV +I SLE QVRERNLNPKAACLKRR +EEK+
Sbjct:  549 IKVSSRGRTSSTNE-DEDLNPE--------QKIEREKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLLILHQAVAVILSLEQQVRERNLNPKAACLKRR-EEEKV 654
The following BLAST results are available for this feature:
BLAST of TCONS_00014720-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HTF42.871e-4067.24Transcription factor 12 OS=Homo sapiens GN=TCF12 P... [more]
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