TCONS_00014683-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00014683-protein
Unique NameTCONS_00014683-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length624

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00014683-protein ID=TCONS_00014683-protein|Name=TCONS_00014683-protein|organism=Clytia hemisphaerica|type=polypeptide|length=624bp
MEHFGSFVKITLWLFLILFFSAIVQAINNIDSSSTNRVILSCGNQNRTNN
GSQIVWQRFGKNLTSNNNFTFNQNKLNIFPCKHLAGNYSCYIRDENGTIT
YEQNFQVFIKFQNDQDQATNVTLYIGESTKTLTFKITSYPEITNITWLHG
NDSIITGEAFESILNGFHYETTATLKLSNINETTDLGEYSIRYFFDGKQF
ERPAVNLIKGGCAPLRWHCLPNNECLYSSLRCNNMKNCPDLSDEVNCTSF
GHITIGNISHVNFTHLKIYYSFDDAFDYFERNYTILVKVREGEKVVVSLN
THQYQDENNFVLVDNISNATTYNITMQATSITGEFGPLVSKLFTVPLAEL
PKVPPLKSVSHSNYNSIIIQLEKYPRDLDYTTTFSLYQNGSKVIDDVTIH
SIPTKSEFPIGRLGDGKLENDLMYTIVIKSNSVVGGSLIPLMINYTIPRM
VAPGPVQSINIVNVRRSFSEILLRVNYTRPLDDGGTKSFKGKLTICVING
QNKQTDCEIHDITLKGMTGEFRFRDLKEETKYSFEVYLLSETNQIGKKKT
VFFTTPKFSESGSSGGLDAGAIAGIVIACLAGVFICSCAFYATFKPRKSP
SNNMQMNNNPKNRKAESQGALEEL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_008221XLOC_008221Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00014683TCONS_00014683Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002172LDrepeatLR_classA_rpt
IPR013783Ig-like_fold
IPR023415LDLR_class-A_CS
IPR007110Ig-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002172Low-density lipoprotein (LDL) receptor class A repeatSMARTSM00192LDLa_2coord: 211..249
e-value: 1.3E-7
score: 41.3
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPFAMPF00057Ldl_recept_acoord: 212..247
e-value: 2.2E-6
score: 27.6
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPROSITEPS50068LDLRA_2coord: 211..248
score: 9.65
IPR002172Low-density lipoprotein (LDL) receptor class A repeatSUPERFAMILY57424LDL receptor-like modulecoord: 212..248
NoneNo IPR availableGENE3D1.20.5.510coord: 558..598
e-value: 3.6E-5
score: 23.0
NoneNo IPR availableGENE3D4.10.400.10coord: 208..247
e-value: 4.5E-8
score: 32.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 600..624
NoneNo IPR availableCDDcd00112LDLacoord: 212..247
e-value: 4.33752E-7
score: 46.431
NoneNo IPR availableCDDcd00096Igcoord: 131..205
e-value: 0.00100436
score: 36.6983
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 20..114
e-value: 7.6E-6
score: 25.5
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 248..349
e-value: 0.027
score: 14.3
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 115..202
e-value: 9.3E-5
score: 22.1
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 452..557
e-value: 2.5E-4
score: 20.6
IPR023415Low-density lipoprotein (LDL) receptor class A, conserved sitePROSITEPS01209LDLRA_1coord: 225..247
IPR007110Immunoglobulin-like domainPROSITEPS50835IG_LIKEcoord: 21..106
score: 7.141
IPR007110Immunoglobulin-like domainSUPERFAMILY48726Immunoglobulincoord: 27..106
IPR007110Immunoglobulin-like domainSUPERFAMILY48726Immunoglobulincoord: 125..192

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014683-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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