TCONS_00014587-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00014587-protein
Unique NameTCONS_00014587-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length239

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00014587-protein ID=TCONS_00014587-protein|Name=TCONS_00014587-protein|organism=Clytia hemisphaerica|type=polypeptide|length=239bp
MEENQRKRKSYFGSAEKERKCHKNTSPFSFGSGKTSRVFNPNVTSSAEKS
ETRRKNESTSRRKLPLSEINGNSKSQRKTKAIALPLEKDERKLATRQRQI
DIGKNTVGYKLYTEDVKRMDRTTDHPWTPNKFTVCSTRSWQGTMRIWRRK
LHYWDPTEMKNDKDTFFDSTLNTIETQKKSIDHSMELDDCPSSESSQASS
NDDLFDGPPKSDSWYQSNEDIFKIKYEDEEEQYLYQQCY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_008162XLOC_008162Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00014587TCONS_00014587Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029344SLBP_RNA_bind
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029344Histone RNA hairpin-binding protein, RNA-binding domainPFAMPF15247SLBP_RNA_bindcoord: 89..156
e-value: 4.8E-26
score: 90.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..79
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 185..214

Blast
[Close]
BLAST of TCONS_00014587-protein vs. Swiss-Prot (Human)
Match: SLBP (Histone RNA hairpin-binding protein OS=Homo sapiens GN=SLBP PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.819e-16
Identity = 63/204 (30.88%), Postives = 91/204 (44.61%), Query Frame = 0 
Query:   19 RKCHKNTSPFSFGSGKTSRVFNPNVTSSAEKSETR-RKNESTSR--RKLPLSEINGNSKSQRKTK-------AIALPLEKDERKLATRQRQIDIGKNTVGYKLYTEDVKRMDRTTD-HPWTPNKFTVCSTRSWQGTMRIWRRKLHYWDPTEMKNDKDTFFDSTLNTIETQKKSIDHSMELDDCPSSESSQASSND--DLFDGPP 209
            R   +    F+   G   R    +  S+ E+ E R R N+  +R  RKL +++     KS   +         +    E DE  L  RQ+QI+ GKNT+ Y  Y ++V R  R    HP TPNKF   S RSW   +++W+  LH+WDP   +          L  I        H ++L+   SS   Q SS D  D++ G P
Sbjct:   51 RGAERRPESFTTPEGPKPRSRCSDWASAVEEDEMRTRVNKEMARYKRKLLINDFGRERKSSSGSSDSKESMSTVPADFETDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQPGIHPKTPNKFKKYSRRSWDQQIKLWKVALHFWDPPAEEG-------CDLQEI--------HPVDLESAESSSEPQTSSQDDFDVYSGTP 239
The following BLAST results are available for this feature:
BLAST of TCONS_00014587-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SLBP3.819e-1630.88Histone RNA hairpin-binding protein OS=Homo sapien... [more]
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