TCONS_00014502-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00014502-protein
Unique Name	TCONS_00014502-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	368

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00014502-protein ID=TCONS_00014502-protein|Name=TCONS_00014502-protein|organism=Clytia hemisphaerica|type=polypeptide|length=368bp
MEELIALNRSANHTFNSTYPTMLSFFSRETTTFYYCAFSLMFVIGSVGNS
AVIYIITLKHQNKKSNFDIYIISLAITDLLASIFLPVVMIHDLYTEWNHW
HLGSFGCKILVPMPHINSLVSALMLVVISFDRLRVIRQTSLKRRSRRITI
AEVVVVWIISILIVSPYIYFLEVQNGFCKDHWERIYRFVYYTVLQFFSCF
FPIIIMIATYATSAHILLHNKFPGDSVYMMKRRRRKQNQRVTQMFGIIVI
IFFVMTTPYMISFFIVAYYGTFDIQTYRVKGKLLFDLQYAFYTLMGFNAC
INPFIYAMRYKDISRTFKRFLSTQRSADKMKRKYGVVKMVDRKYGFVGIS
AKLIQQEDFFKGEALDSG

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_008111	XLOC_008111	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00014502	TCONS_00014502	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000276	GPCR_Rhodpsn
IPR017452	GPCR_Rhodpsn_7TM

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000276	G protein-coupled receptor, rhodopsin-like	PRINTS	PR00237	GPCRRHODOPSN	coord: 191..214 score: 17.32 coord: 67..88 score: 31.46 coord: 148..169 score: 21.59 coord: 33..57 score: 24.06 coord: 114..136 score: 28.76 coord: 288..314 score: 25.91 coord: 241..265 score: 23.65
IPR000276	G protein-coupled receptor, rhodopsin-like	PFAM	PF00001	7tm_1	coord: 48..306 e-value: 3.4E-38 score: 131.3
None	No IPR available	GENE3D	1.20.1070.10		coord: 2..337 e-value: 1.4E-56 score: 191.3
None	No IPR available	SUPERFAMILY	81321	Family A G protein-coupled receptor-like	coord: 11..326
IPR017452	GPCR, rhodopsin-like, 7TM	PROSITE	PS50262	G_PROTEIN_RECEP_F1_2	coord: 48..306 score: 34.875

Blast

[Close]

BLAST of TCONS_00014502-protein vs. Swiss-Prot (Human)
Match: CCR1 (C-C chemokine receptor type 1 OS=Homo sapiens GN=CCR1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 5.277e-20
Identity = 76/295 (25.76%), Postives = 138/295 (46.78%), Query Frame = 0

Query:   38 FSLMFVIGSVGNSAVIYIITLKHQNKKSNFDIYIISLAITDLLASIFLPVVMIHDLYTEWNHWHLGSFGCKILVPMPHINSLVSALMLVVISFDRLRVIRQTSLKRRSRRITIAEV--VVVWIISILIVSPYIYFLEVQNGF----CKDHWE----RIYRFVYYTVLQFFSCFFPIIIMIATYATSAHILLHNKFPGDSVYMMKRRRRKQNQRVTQMFGIIVIIFFVMTTPYMISFFIVAYYGTFDIQTYRVKGKLLFDLQYAFYTLMGF-NACINPFIYAMRYKDISRTFKRFL 321
            +SL+FVIG VGN  V+ ++ ++++  K+   IY+++LAI+DLL    LP  + + L  +W     G   CKIL    +         +++++ DR   I       R+R +T   +  +++W ++IL   P +YF + Q  F    C  H+     R ++      L  F    P+++MI  Y     ILL             RR  ++  +  ++  +I+IIFF+  TPY ++  I  +     + T+  +     DL      ++ + + C+NP IYA     +   F+++L
Sbjct:   41 YSLVFVIGLVGNILVV-LVLVQYKRLKNMTSIYLLNLAISDLLFLFTLPFWIDYKLKDDWV---FGDAMCKILSGFYYTGLYSEIFFIILLTIDRYLAIVHAVFALRARTVTFGVITSIIIWALAILASMPGLYFSKTQWEFTHHTCSLHFPHESLREWKLFQALKLNLFGLVLPLLVMIICYTGIIKILL-------------RRPNEKKSKAVRLIFVIMIIFFLFWTPYNLTILISVFQDF--LFTHECEQSRHLDLAVQVTEVIAYTHCCVNPVIYAF----VGERFRKYL 312

The following BLAST results are available for this feature:

BLAST of TCONS_00014502-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00014502-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CCR1	5.277e-20	25.76	C-C chemokine receptor type 1 OS=Homo sapiens GN=C...	[more]

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TCONS_00014502-protein (polypeptide) - C. hemisphaerica