TCONS_00014495-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00014495-protein
Unique NameTCONS_00014495-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length659

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00014495-protein ID=TCONS_00014495-protein|Name=TCONS_00014495-protein|organism=Clytia hemisphaerica|type=polypeptide|length=659bp
MNKKYDVNFTTLCQKREIQSGLFNRKFQKALQINLPFVQRLGLQDELQGH
TGCVNCLEWSGCGEYLASGSDDFNVIIWNVFQQKAKHVLPTRHDGNIFTV
KFLPASNNNIVVTGAADACLKTHDVPSSRTIQNFYCHSRRIKRLAVCDSS
PSMIWSASEDGTVREFDLRSPHKCSSESPCRNVLVNLKTQSVPNKEVKCI
QLHPHFPELFAVGATDPFVRLYDRRNMNLSELSNDIRTDDKSGCVSYLSP
GHLPNRKTRRRPNKYRHYTSTYIQFSPDGREILQNLGGEHIYLYEYNKKK
KPVIFTSQGEANDHDTIKQHNIHRCGNGLNSTYEMRSRSRYEHDMIHDTP
CDKATSLKQKGNDYFSNENFFQAVVYYNKAIALSPNSSVLYANRAAALLK
RKWDGDIYGALRDCQTAIQLDPTHSKAYFRQAKCLFELQWIEEASLCIET
FKEKFSEQSNSYSLKMLERDIEQHLTRRAETESESESEIFHRNPSRLESY
HQLNAFDYHQRFVGSCNTTTDIKEANFFGDNGQYIVAGSDCGCMLLWDRT
TTNLIEAWQGDESIVNCVQPHPSSCLVATSGLDPVVRLWSPRPVDEDYVD
SRSKEVEVLVRTNQKRMNTDPLEEMLRTMGYHAFRDDEDGQDDSDVEGDD
DQPTQCRTS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_008108XLOC_008108Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00014495TCONS_00014495Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR011990TPR-like_helical_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR000772Ricin_B_lectin
IPR013026TPR-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 464..484
NoneNo IPR availableGENE3D2.80.10.50coord: 467..622
e-value: 2.9E-13
score: 49.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 630..659
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 354..387
e-value: 4.7E-4
score: 29.5
coord: 388..424
e-value: 9.6
score: 15.1
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 354..387
score: 9.971
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 509..548
e-value: 11.0
score: 10.3
coord: 127..167
e-value: 3.0E-4
score: 30.1
coord: 82..124
e-value: 0.67
score: 18.1
coord: 40..79
e-value: 1.5E-8
score: 44.4
coord: 551..590
e-value: 6.9E-4
score: 28.9
coord: 183..223
e-value: 0.75
score: 17.8
IPR001680WD40 repeatPFAMPF00400WD40coord: 563..590
e-value: 0.0034
score: 18.1
coord: 44..79
e-value: 2.9E-7
score: 31.0
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 558..590
score: 8.804
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 47..88
score: 13.215
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 32..332
e-value: 5.2E-37
score: 126.9
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 333..416
e-value: 5.2E-12
score: 45.3
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 417..466
e-value: 4.4E-7
score: 29.4
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 353..449
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 66..80
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 528..599
score: 11.234
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 47..176
score: 19.96
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 512..589
coord: 38..228
coord: 259..304
IPR000772Ricin B, lectin domainPROSITEPS50231RICIN_B_LECTINcoord: 106..174
score: 8.53
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 354..458
score: 13.438

Blast
[Close]
BLAST of TCONS_00014495-protein vs. Swiss-Prot (Human)
Match: WDTC1 (WD and tetratricopeptide repeats protein 1 OS=Homo sapiens GN=WDTC1 PE=1 SV=2)

HSP 1 Score: 505.368 bits (1300), Expect = 1.185e-171
Identity = 282/683 (41.29%), Postives = 399/683 (58.42%), Query Frame = 0 
Query:    7 VNFTTLCQKREIQS-GLFNRKFQKALQINLPFVQRLGLQDELQGHTGCVNCLEWSGCGEYLASGSDDFNVIIWNVFQQKAKHVLPTRHDGNIFTVKFLPASNNNIVVTGAADACLKTHDVPSSRTIQNFYCHSRRIKRLAVCDSSPSMIWSASEDGTVREFDLRSPHKCSSESPCRNVLVNLKTQSVPNKEVKCIQLHPHFPELFAVGATDPFVRLYD-------RRNMNLSELSN-----DIRTDDKSGCVSYLSPGHLPNRKTRRRPNKYRHYTSTYIQFSPDGREILQNLGGEHIYLYEYNKKKKPVIFTSQGEANDHDTIKQHNIHRCG--NGLNSTYEMRSRS-RYEHDMIHDTPCDKATS----LKQKGNDYFSNENFFQAVVYYNKAIALSPNSSVLYANRAAALLKRKWDGDIYGALRDCQTAIQLDPTHSKAYFRQAKCLFELQWIEEASLCIETFKEKFSEQSNSYSLKMLERDIEQHLTRRAETESESE----SEIFHRNPSRLESYHQ------LNAFDYHQRFVGSCNTTTDIKEANFFGDNGQYIVAGSDCGCMLLWDRTTTNLIEAWQGDESIVNCVQPHPSSCLVATSGLDPVVRLWSPRPVDEDYVDSRSKEVEVLVRTNQKRMNTDPLEEMLRTMGYHAFRDDEDGQDDSDVEGDDDQPTQCRTS 659
            VN T    +R+I+  G  +  F++   +  PF++RLGL+ ELQGH+GCVNCLEW+  G+ LASGSDD + I+W+    K    + T H  NIF+VKFLP + + I++TGAAD+ +  HD+    TI  F  H+ R+KR+A     P+  WSA+EDG +R++DLR   K S       VL++L        E KC+ ++P      AVGA+ PFVRLYD       R++M  S  +      D +     G   Y   GHLP  K     N+ R   +TY+ FSP+G E+L N+GGE +YL++   K++P  F    + +    ++   +   G  NG+++   + S   R      H +P  +       +KQ+ N+ F+ + + QA+  Y+KA+  +P++++LY NRAAA +KRKWDGD Y ALRDC  AI L+P H KA+FR A+CLFEL+++ EA  C++ FK KF EQ++S +   L RDI   L  + + E +      + +  R+ SR +S  +        ++DY  R+ G CNTTTDIKEANFFG N QYIV+GSD G   +W++ TTNL+   QGDESIVNC+QPHPS C +ATSG+DPVVRLW+PRP  ED      +++E   + NQ+RMN DPLE ML  MGY        G   SD E   +   QCR S
Sbjct:    4 VNITRDLIRRQIKERGALS--FERRYHVTDPFIRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTANIFSVKFLPHAGDRILITGAADSKVHVHDLTVKETIHMFGDHTNRVKRIATAPMWPNTFWSAAEDGLIRQYDLRENSKHSE------VLIDLTEYCGQLVEAKCLTVNPQDNNCLAVGASGPFVRLYDIRMIHNHRKSMKQSPSAGVHTFCDRQKPLPDGAAQYYVAGHLP-VKLPDYNNRLRVLVATYVTFSPNGTELLVNMGGEQVYLFDLTYKQRPYTFLLPRKCHSSGEVQNGKMSTNGVSNGVSNGLHLHSNGFRLPESRGHVSPQVELPPYLERVKQQANEAFACQQWTQAIQLYSKAVQRAPHNAMLYGNRAAAYMKRKWDGDHYDALRDCLKAISLNPCHLKAHFRLARCLFELKYVAEALECLDDFKGKFPEQAHSSACDALGRDITAALFSKNDGEEKKGPGGGAPVRLRSTSRKDSISEDEMVLRERSYDYQFRYCGHCNTTTDIKEANFFGSNAQYIVSGSDDGSFFIWEKETTNLVRVLQGDESIVNCLQPHPSYCFLATSGIDPVVRLWNPRPESEDLTGRVVEDMEGASQANQRRMNADPLEVMLLNMGYRITGLSSGGAGASDDEDSSEGQVQCRPS 677
The following BLAST results are available for this feature:
BLAST of TCONS_00014495-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDTC11.185e-17141.29WD and tetratricopeptide repeats protein 1 OS=Homo... [more]
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