TCONS_00014458-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00014458-protein
Unique NameTCONS_00014458-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length914

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00014458-protein ID=TCONS_00014458-protein|Name=TCONS_00014458-protein|organism=Clytia hemisphaerica|type=polypeptide|length=914bp
MTSKVDSKTATLTRDGDHIDSKAKRMQTFLKRIAKSRSTLPKVPSHAVDE
KDSGPEIGKSQTLQPPKTPKTPSSTIATNGAKTADDRKETEETKLLKIQK
DVKSALIYYKVILKKGFIQKLPGTATAVLESIINAEEIIDKCIKSLSRMP
SLDTDSSEVPMLKEKLHRSITFLVRISDDVLFDSYLHVRVDEISALKAAD
AVSLSLQLLYDEVLPLIKKFSLNAELLKFSSFSHHSSNNSLDDLDNIPET
EILDDCITSSPIVNAPPKPPLPNDNRSYYGNANGPSIRKSISHPGEASSP
VIKEPPQRPQSHMNAHPDFSPAFSGNLGSKSSLSTVSSGSIGSPSPMKFG
SSQFFDGDTTIGSQQEMNEAGVTTETIRKVHSFSQNYEALAQSRVSLFNG
GADDDLLSPSNELEDIAPELPRKKQKHNNENYLQIVGDYYNDRPSSMYDN
LNAFGTLPNVNNVDELVRGDGLPKLPPKRRFYDHRGSVGSVEEDVSHFKS
SQVIRERKQRNSRRESTMTYEEDNVPALDCKDVSHLLLYKKEVEKKYPML
CGGTVDALVVFATQVDSDDVFYKAFLATYRTFISPAELICKLLYRANRFQ
TKGKLNSSISMKVLKLLVQVFDEMFEELDKSLFDQLRSQVHRLLNTGELQ
LGKNLRDKLVGYCIKLQQNHLPSYQPVESTAEIFEFKSFELSQQMCLLDA
DYFRKIELPEVLRWGKEQSETFSPNLSRFIGHFNSMSFWVRTLILKETRQ
AEREKMYKKFLKIMRILKRLNNFSSFLAILSALDSTPIRRLEWPKQYTEL
LLEDSKLIESSSGFKLYREALAGAKLPCIPYLGLILTDITFVHLGNKHEL
PDGKINFVKRWQQFNILDSVRRFKEGLYDYEKNEKILDFFNEYEDHMDED
EMWDQSLVLKPRGK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_008084XLOC_008084Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00014458TCONS_00014458Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001895RASGEF_cat_dom
IPR000651Ras-like_Gua-exchang_fac_N
IPR019804Ras_G-nucl-exch_fac_CS
IPR023578Ras_GEF_dom
Vocabulary: Biological Process
TermDefinition
GO:0007264small GTPase mediated signal transduction
Vocabulary: Molecular Function
TermDefinition
GO:0005085guanyl-nucleotide exchange factor activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007264 small GTPase mediated signal transduction
molecular_function GO:0005085 guanyl-nucleotide exchange factor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001895Ras guanine-nucleotide exchange factors catalytic domainSMARTSM00147RasGEF_3coord: 683..913
e-value: 7.1E-65
score: 231.5
IPR001895Ras guanine-nucleotide exchange factors catalytic domainGENE3D1.10.840.10coord: 669..914
e-value: 8.0E-66
score: 221.7
IPR001895Ras guanine-nucleotide exchange factors catalytic domainPFAMPF00617RasGEFcoord: 690..860
e-value: 5.7E-44
score: 150.3
IPR001895Ras guanine-nucleotide exchange factors catalytic domainPROSITEPS50009RASGEF_CATcoord: 687..912
score: 60.068
IPR001895Ras guanine-nucleotide exchange factors catalytic domainCDDcd00155RasGEFcoord: 688..907
e-value: 4.17783E-60
score: 203.638
IPR000651Ras-like guanine nucleotide exchange factor, N-terminalSMARTSM00229rasgefn_5coord: 545..667
e-value: 3.2E-4
score: 30.0
IPR000651Ras-like guanine nucleotide exchange factor, N-terminalPFAMPF00618RasGEF_Ncoord: 552..632
e-value: 1.2E-8
score: 35.1
IPR000651Ras-like guanine nucleotide exchange factor, N-terminalPROSITEPS50212RASGEF_NTERcoord: 546..667
score: 16.505
IPR000651Ras-like guanine nucleotide exchange factor, N-terminalCDDcd06224REMcoord: 554..660
e-value: 8.92051E-9
score: 53.1852
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..91
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 259..360
IPR019804Ras guanine-nucleotide exchange factor, conserved sitePROSITEPS00720RASGEFcoord: 829..859
IPR023578Ras guanine nucleotide exchange factor domainSUPERFAMILY48366Ras GEFcoord: 522..913

Blast
[Close]
BLAST of TCONS_00014458-protein vs. Swiss-Prot (Human)
Match: RPGF1 (Rap guanine nucleotide exchange factor 1 OS=Homo sapiens GN=RAPGEF1 PE=1 SV=3)

HSP 1 Score: 353.599 bits (906), Expect = 3.409e-106
Identity = 193/413 (46.73%), Postives = 270/413 (65.38%), Query Frame = 0 
Query:  515 ESTMTYEE-DNVPALDCKDVSHLLLYKKEVEKKYPMLCGGTVDALVVFATQVDSDDV--FYKAFLATYRTFISPAELICKLLYRANRFQT-KGKLNSSISMKVLKLLVQVFDEM-FEELDKSLFDQLRSQVHRLLNTGELQLGKNLRDKLVGYCIKLQQNHL----PSYQPVES------TAEIFEFKSFELSQQMCLLDADYFRKIELPEVLRWGKEQSETFSPNLSRFIGHFNSMSFWVRTLILKETRQAEREKMYKKFLKIMRILKRLNNFSSFLAILSALDSTPIRRLEWPKQYTELLLEDSKLIESSSGFKLYREALAGAKLPCIPYLGLILTDITFVHLGNKHELPDGKINFVKRWQQFNILDSVRRFKEGLYDYEKNEKILDFFNEYEDHMDEDEMWDQSLVLKPR 912
            ES  + EE D +  +D  ++   L  K+E +   P + GG+ D L+V AT+ D  D+  + +AFL TYRTFISP ELI KL YR  +F          +S     +LV+V DE+   EL + +   L   V RL+  GEL L + LR  ++    K+ Q  L     S QP+ +         + +F S E+++Q+ LLDA+ F KIE+PEVL W KEQ+E  SPNL++F  HFN+MS+WVR++I+ + +  +RE++  KF+KIM+ L++LNNF+S+LAILSALDS PIRRLEW KQ +E L E   LI+SSS F+ YR AL+  + PCIPYLGLIL D+TFVHLGN   + DGK+NF KRWQQFNILDS+R F++  YD  +N+ I++FFN++ DH+ E+ +W+ SL +KPR
Sbjct:  657 ESAQSEEEVDELSLIDHNEIMSRLTLKQEGDDG-PDVRGGSGDILLVHATETDRKDLVLYCEAFLTTYRTFISPEELIKKLQYRYEKFSPFADTFKKRVSKNTFFVLVRVVDELCLVELTEEILKLLMELVFRLVCNGELSLARVLRKNILD---KVDQKKLLRCATSSQPLAARGVAARPGTLHDFHSHEIAEQLTLLDAELFYKIEIPEVLLWAKEQNEEKSPNLTQFTEHFNNMSYWVRSIIMLQEKAQDRERLLLKFIKIMKHLRKLNNFNSYLAILSALDSAPIRRLEWQKQTSEGLAEYCTLIDSSSSFRAYRAALSEVEPPCIPYLGLILQDLTFVHLGNPDYI-DGKVNFSKRWQQFNILDSMRCFQQAHYDMRRNDDIINFFNDFSDHLAEEALWELSLKIKPR 1064
The following BLAST results are available for this feature:
BLAST of TCONS_00014458-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPGF13.409e-10646.73Rap guanine nucleotide exchange factor 1 OS=Homo s... [more]
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