TCONS_00014188-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00014188-protein
Unique Name	TCONS_00014188-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	801

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00014188-protein ID=TCONS_00014188-protein|Name=TCONS_00014188-protein|organism=Clytia hemisphaerica|type=polypeptide|length=801bp
MSSMWKKALHHGGGGDDGEDVNEKRLTPLSHRRLMNEDKEERRSLVESEA
DSDDDILQFDEDKEEIDQHLSPKHRASSPLVKRSPSPLRKSPLLFLKKEQ
GNQEERASLIDENDDDSEGSGERPSTPVQEIGSKPIDHGSTSSPVKPTDS
PSTAVPRPVASKWARLRLSAPVATPKEPEKRVDVVGNGNENQNGSLPKKV
SPWQKLRDQNATANDKPKQVNFELNDMASDKPTQPKLTSSGWGKLRARQN
FGDQSNNTESVPMEEISTETPAPRKLDSLANAAYAMHATQKLTGVLKDRA
DKAKERVSIRERLALKERMAKLVAERLTIKQIFKRYVETSTLHGFCYVCT
ETFIVRRVIWALLMIFGAVYFLVKLNDGVHRYFTYPISTLSNTIFVPNLI
FPAISFCPVNPYKLENFNTSILHKIQETSGLPLFSNWTNPGYDVSGQDLH
DAIYAHAYDIDELAPDCDYIKQDTDHPMRAHRDCGPHNFTRYISQHGELC
FTINSGHEDHPILNVNHNGIGYGYELLFDLNLPGSVLMEAFSGIRVILHD
QNETPVFQTGFLLAPGFKSFIQMQRTETINLPPPVATRCGSKPLKYSNVY
NQKNCFLEVITDRTGEACGCRELYMPDNGLPFCSLQQQLNCTQPFKEQIS
QLDLIDECPIDCKVTSFKTEKTDTRFLHNAPQGMMPTILLNNAARKGKNS
SHLAKIYEELKGTDELDLYIEENMIRALFFYPEMKLTVNQQQQTFTFYHF
LGDIGGEFGLMLGASLLTFVEFMDLLIFLTYHQMLRLNKQKKESAAGQQK
T

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_007942	XLOC_007942	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00014188	TCONS_00014188	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001873	ENaC

Vocabulary: **Biological Process**
Term	Definition
GO:0006814	sodium ion transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0005272	sodium channel activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006814	sodium ion transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0005272	sodium channel activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001873	Epithelial sodium channel	PRINTS	PR01078	AMINACHANNEL	coord: 755..771 score: 44.71 coord: 397..413 score: 44.47 coord: 543..561 score: 32.63 coord: 357..374 score: 20.44 coord: 741..755 score: 18.67 coord: 488..504 score: 28.24
IPR001873	Epithelial sodium channel	PFAM	PF00858	ASC	coord: 336..775 e-value: 2.2E-66 score: 224.6
None	No IPR available	GENE3D	1.10.287.770		coord: 730..783 e-value: 1.3E-12 score: 47.0
None	No IPR available	GENE3D	2.60.470.10		coord: 388..729 e-value: 2.4E-31 score: 108.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..201
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 248..271

Blast

[Close]

BLAST of TCONS_00014188-protein vs. Swiss-Prot (Human)
Match: ASIC2 (Acid-sensing ion channel 2 OS=Homo sapiens GN=ASIC2 PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.629e-42
Identity = 129/492 (26.22%), Postives = 221/492 (44.92%), Query Frame = 0

Query:  336 YVETSTLHGFCYVCTET-FIVRRVIWALLMIFGAVYFLVKLNDGVHRYFTYPISTLSNTIFVPNLIFPAISFCPVNPYKLENFNTSILHKIQETSGLPLFSNWTNPGYDVSGQDLHDAIYAHA--------------------YDIDELAPDCDYIKQDTDHPMRAHRDCGPHNFTRYISQHGELCFTINSGHEDHPILNVNHNGIGYGYELLFDLN----LP--GSVLMEAF-SGIRVILHDQNETPVFQ-TGFLLAPGFKSFIQMQRTETINLPPPVA-TRCGSKPLKYSNVYNQKNCFLEVITDRTGEACGCRELYMPDNGLPFCSLQQQLNCTQPFKEQISQLDL-IDECPIDCKVTSFKTEKTDTRFLHNAPQGMMPTILLNNAARKGKNSSHLAKIYEELKGTDELDLYIEENMIRALFFYPEMKLTVNQQQQTFTFYHFLGDIGGEFGLMLGASLLTFVEFMDLLIFLTYHQMLRLNKQKKESAA 796
            +  TSTLHG  ++       +RRV+WA+  +      LV+ ++ V  YF+Y   T  + +   +L+FPA++ C +N ++     T+ L+   E   L L  N   P   ++   + +A+   A                    +D+ ++   C +  Q          +CG  +FT   +++G+ C+  NSG +  P+L     G G G E++ D+     LP  G      F +G++V +H Q+E P  Q  GF +APGF++F+  Q      LPPP    R     L +  VY+   C ++  T    E C CR ++MP +  PFC+ +Q   C +P    +++ D     C   C +T +  E                   L+      K S   AK  E  K  ++ + YI EN++    F+  +     +Q++ +     LGDIGG+ GL +GAS+LT +E  D +  L   ++L L  ++++  +
Sbjct:   20 FANTSTLHGIRHIFVYGPLTIRRVLWAVAFVGSLGLLLVESSERVSYYFSYQHVTKVDEVVAQSLVFPAVTLCNLNGFRFSRLTTNDLYHAGELLAL-LDVNLQIPDPHLADPSVLEALRQKANFKHYKPKQFSMLEFLHRVGHDLKDMMLYCKFKGQ----------ECGHQDFTTVFTKYGK-CYMFNSGEDGKPLLTTVKGGTGNGLEIMLDIQQDEYLPIWGETEETTFEAGVKVQIHSQSEPPFIQELGFGVAPGFQTFVATQEQRLTYLPPPWGECRSSEMGLDFFPVYSITACRIDCETRYIVENCNCRMVHMPGDA-PFCTPEQHKECAEPALGLLAEKDSNYCLCRTPCNLTRYNKE-------------------LSMVKIPSKTS---AKYLE--KKFNKSEKYISENILVLDIFFEALNYETIEQKKAYEVAALLGDIGGQMGLFIGASILTILELFDYIYELIKEKLLDLLGKEEDEGS 474

The following BLAST results are available for this feature:

BLAST of TCONS_00014188-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00014188-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ASIC2	1.629e-42	26.22	Acid-sensing ion channel 2 OS=Homo sapiens GN=ASIC...	[more]

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TCONS_00014188-protein (polypeptide) - C. hemisphaerica