TCONS_00014151-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00014151-protein
Unique NameTCONS_00014151-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length284

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00014151-protein ID=TCONS_00014151-protein|Name=TCONS_00014151-protein|organism=Clytia hemisphaerica|type=polypeptide|length=284bp
MSNVKVDSVQVLRGEYEWLLAEEVPSMTKQLKSFIQACLQKVNILSSPAH
TIKGNNFLLSLPNSDAVKGLINVAGDSVIKAELKFKFPKYASNGIGTFIF
EQCPWKLQQLQDTSNHLKMAFEELKEQEYNSSLLEKQRVNQLLDQIMMSL
SCAKNSLLVPQKQSMSQIMGSNCQKVLNPPIPEEILVNFHVNCDKLVFDV
FLLNVLTTNTPNQKYVNDLSAVGSMFEFEGRWFEIANKYEIICTVPWLKD
MIVWINTAQQLCQQLKDKLKIFDTLAPNLERKNY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007917XLOC_007917Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00014151TCONS_00014151Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028241RAVE2/Rogdi
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 107..127
IPR028241RAVE subunit 2/RogdiPFAMPF10259Rogdi_lzcoord: 15..270
e-value: 4.2E-30
score: 105.0

Blast
[Close]
BLAST of TCONS_00014151-protein vs. Swiss-Prot (Human)
Match: ROGDI (Protein rogdi homolog OS=Homo sapiens GN=ROGDI PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.074e-46
Identity = 89/269 (33.09%), Postives = 152/269 (56.51%), Query Frame = 0 
Query:   11 VLRGEYEWLLAEEVPSMTKQLKSFI-QACLQKVNILSSPAHTIKGNNFLLSLPNSDAVKGLINVAGDSVIKAELKFKFPKYASNGIGTFIF-EQCPWKLQQLQDTSNHLKMAFEELKEQEYNSSLLEKQRVNQLLDQIMMSLSCAKNSLLVPQKQSMSQIMGSNCQKVLNPPIPEEILVNFHVNCDKLVFDVFLLNVLTTN-TPNQKYVND--LSAVGSMFEFEGRWFEIANKYEIICTVPWLKDMIVWINTAQQLCQQLKDKLKIFDT 274
            VL  E+ WLL +EV ++ KQL+  + +A L+     S      K  NF+L    +D VKG++ + GD++ +A++  K P+  +N +  F F E   WKLQQ+QD  NH+  A   L  ++ +        V +L+D +M+ L+ A+N L  P   ++ +I  S   ++  P +P ++LVN ++N +KL   V+ L+ L  N T N +      L + G+MFE+  +  E+++ +++ C +PWL D +V+   + QLCQQLKDK+ +F +
Sbjct:   14 VLEEEFRWLLHDEVHAVLKQLQDILKEASLRFTLPGSGTEGPAKQENFILGSCGTDQVKGVLTLQGDALSQADVNLKMPR--NNQLLHFAFREDKQWKLQQIQDARNHVSQAIYLLTSRDQSYQFKTGAEVLKLMDAVMLQLTRARNRLTTPATLTLPEIAASGLTRMFAPALPSDLLVNVYINLNKLCLTVYQLHALQPNSTKNFRPAGGAVLHSPGAMFEWGSQRLEVSHVHKVECVIPWLNDALVYFTVSLQLCQQLKDKISVFSS 280
The following BLAST results are available for this feature:
BLAST of TCONS_00014151-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ROGDI1.074e-4633.09Protein rogdi homolog OS=Homo sapiens GN=ROGDI PE=... [more]
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