TCONS_00013904-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00013904-protein
Unique Name	TCONS_00013904-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	738

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00013904-protein ID=TCONS_00013904-protein|Name=TCONS_00013904-protein|organism=Clytia hemisphaerica|type=polypeptide|length=738bp
MAKEKMDPRFQRVLKDPRFKKVPRNERKVKIDSRFSKMFTDERFHTKSTV
DKRGRVIKESNKEDLRKFYDVEDEESEEGGETFTQEELLGEGSKAAKKSK
GKEKKPKEKVQDERKKAKTKLQESSGESSSEEEEDENDFTPDFSDIRGEG
IGHDMSSDSSSDEEDEIVDFDQLQEGVVHGWGELDEEARRIEDAETPRIA
VCNCDWDRIKANDLFVLFNSFKPTGGAIKSVKIYVSDFGEERLKEEELKG
PKELRESKQDSDEEDGDQEENAEGSKYDMEKLREYQLNRMKYYYAVVECS
DKDTADKIYEQCDGMEYELSGTRLDLRFVPDDMTFDKEPTSEANELPNVQ
NYQPASFLNTALQQSTVRLTWDEDDPKRLQSTMRQFTREDLENMDFKDYI
ASSSDEEDITKSSNNKKAQKHKQPKEVEISEDEESDEDNCDEKERIKKYR
QLMDEINAKERQNENDDDGDGNMEVTWSMEDQSSFKKAKDNDEDVSEGEN
STSGEEEAESDDEEALRADGDDDDGFDDPFFSQPSEMNEKISASVDDENE
NIINGVKNKNQKKKKKKAKKDSQMTEEELKQKNELELLLLGDETTEEQKK
HFSLKGIMEQEKNTKKNNKRKKRKLKEEQPEDDFVFNTKDERFNALYDSH
LFSLDPSEPNFKKTKATEAIIGEAQKRRENRAQERTEKVKYNTNSKNDVE
SKSSSTKDMSKASLSALVKSVKSKTQNHQAQKQKRKLR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_007759	XLOC_007759	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00013904	TCONS_00013904	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012580	NUC153

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 608..628
None	No IPR available	COILS	Coil	Coil	coord: 107..127
None	No IPR available	COILS	Coil	Coil	coord: 558..585
None	No IPR available	COILS	Coil	Coil	coord: 446..466
None	No IPR available	GENE3D	3.30.70.330		coord: 93..330 e-value: 8.1E-4 score: 19.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 402..633
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 672..738
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..174
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 245..278
IPR012580	NUC153	PFAM	PF08159	NUC153	coord: 640..667 e-value: 1.4E-9 score: 37.5

Blast

[Close]

BLAST of TCONS_00013904-protein vs. Swiss-Prot (Human)
Match: ESF1 (ESF1 homolog OS=Homo sapiens GN=ESF1 PE=1 SV=1)

HSP 1 Score: 339.732 bits (870), Expect = 9.693e-105
Identity = 233/612 (38.07%), Postives = 351/612 (57.35%), Query Frame = 0

Query:  141 PDFSDIRGEGIGHDMSSDSSSDEEDEIVDFDQLQEGVVHGWGELDEEARRIEDAETPRIAVCNCDWDRIKANDLFVLFNSFKPTGGAIKSVKIYVSDFGEERLKEEELKGPKELRESKQDSDEEDGDQEENAEGSKYDMEKLREYQLNRMKYYYAVVECSDKDTADKIYEQCDGMEYELSGTRLDLRFVPDDMTFDKEPTSEANELPNVQNYQPASFLNTALQQSTVRLTWDEDDPKRLQSTMRQFTREDLENMDFKDYIASSSDEEDITKSSNNKKAQKHKQPKEVEISEDEESDEDNCDEKERIKKYRQLMDEINAKERQNENDDDGDGNMEVTWSMEDQSSFKKAKDNDEDVSEGENSTSGEEE--------------AESDDEEALRADGDDDDGFDDPFFSQPSEMNEKISASVDDENENIINGVKNKNQKKKKKKAKKDSQMTEEEL---KQKNELELLLLGDETTEEQKKHFSLKGIMEQEKNTKKNNKRKKRKLKEEQPEDDFVFNTKDERFNALYDSHLFSLDPSEPNFKKTKATEAIIGEAQKRRENRAQERTEKVKYNTNSKNDVESKSSSTKDMSKASLSALVKSVKSKTQNHQAQKQKR 735
            PD +  RG+G     + ++SS++ED+  D    + G  H W ELD++A R ++  T R+AVCN DWDR+KA DL  LFNSFKP GG I SVKIY S+FG+ER+KEE+++GP EL    +D+ E+D    E          KLR+YQ  R+KYYYAVV+C   +TA KIYE CDG+E+E S + +DLRF+PDD+TFD EP   A+E+ N+  Y+P  F + A+  STV +TWDE D +R+    R+F +E+L +MDF+ Y+ASSS           +  ++ +    V + ED ++ +   D++E+I KYRQL+  I  KE++ +   + D  ME+ W    + S   A++  ++  EG++  +  E+               ++  EEA   +   D   +DP+F++                      VK     KK  K+ KD    EEE+   +QK E+ LL++ ++  E+ KKHF+   I+E +  +KK  K+  +K  +E  EDDF  N  D RF A+Y SHLF+LDPS+PNFKKTKA E I+ E  ++RE + QE T+ +K   +       + S        +LS L+KS+K+KT+  QA+K+++
Sbjct:  300 PDLA--RGKG-----NIETSSEDEDDTADLFPEESGFEHAWRELDKDAPRADEI-TRRLAVCNMDWDRLKAKDLLALFNSFKPKGGVIFSVKIYPSEFGKERMKEEQVQGPVELLSIPEDAPEKDWTSRE----------KLRDYQFKRLKYYYAVVDCDSPETASKIYEDCDGLEFESSCSFIDLRFIPDDITFDDEPKDVASEV-NLTAYKPKYFTSAAMGTSTVEITWDETDHERITMLNRKFKKEELLDMDFQAYLASSS-------EDEEEIEEELQGDDGVNVEEDGKTKKSQKDDEEQIAKYRQLLQVIQEKEKKGK---ENDMEMEIKWVPGLKES---AEEMVKNKLEGKDKLTPWEQFLEKKKEKKRLKRKQKALAEEASEEELPSDVDLNDPYFAEE---------------------VKQIGINKKSVKSAKDGTSPEEEIEIERQKAEMALLMMDED--EDSKKHFNYNKIVEHQNLSKKKKKQLMKK--KELIEDDFEVNVNDARFQAMYTSHLFNLDPSDPNFKKTKAMEKILEEKARQRERKEQELTQAIKKKESEIEKESQRKSID-----PALSMLIKSIKTKTEQFQARKKQK 849

HSP 2 Score: 86.6557 bits (213), Expect = 2.240e-17
Identity = 41/75 (54.67%), Postives = 51/75 (68.00%), Query Frame = 0

Query:    7 DPRFQRVLKDPRFKKVPRNERKVKIDSRFSKMFTDERFHTKSTVDKRGRVIKESNKEDLRKFYDVEDEESEEGGE 81
            D RF+RV KDPRF ++P  +RKVKID RF  MF D++F     VDKRGR I  S  EDL++FYD+ D +S   GE
Sbjct:   10 DQRFRRVAKDPRFWEMPEKDRKVKIDKRFRAMFHDKKFKLNYAVDKRGRPISHSTTEDLKRFYDLSDSDSNLSGE 84

The following BLAST results are available for this feature:

BLAST of TCONS_00013904-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00013904-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ESF1	9.693e-105	38.07	ESF1 homolog OS=Homo sapiens GN=ESF1 PE=1 SV=1	[more]

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TCONS_00013904-protein (polypeptide) - C. hemisphaerica