TCONS_00013894-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00013894-protein
Unique NameTCONS_00013894-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length206

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00013894-protein ID=TCONS_00013894-protein|Name=TCONS_00013894-protein|organism=Clytia hemisphaerica|type=polypeptide|length=206bp
LEPLTARVETGRPLTNYKFVESRDFNVFILQTPSLILAKRLENFFQRQAQ
KTGDDRRKTEKLKPTKKYLRPPINLEFFILVRGIMRWEYKEEHAFERRRS
EGEKIRRKYPDRVPVIVEKSPKAKIGDLDKKKYLVPSDLTVGQFYFLIRK
RIHLRAEDALFFFVNNTIPPTSATMGALYQEHHEEDFFLYVAYSDESVYG
GSPSLV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007755XLOC_007755Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00013894TCONS_00013894Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004241Atg8-like
IPR029071Ubiquitin-rel_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.20.90coord: 84..200
e-value: 1.9E-52
score: 175.8
IPR004241Autophagy protein Atg8 ubiquitin-likePFAMPF02991Atg8coord: 97..200
e-value: 1.8E-47
score: 159.7
IPR004241Autophagy protein Atg8 ubiquitin-likeCDDcd01611GABARAPcoord: 89..200
e-value: 3.66322E-66
score: 200.54
IPR029071Ubiquitin-related domainSUPERFAMILY54236Ubiquitin-likecoord: 85..200

Blast
[Close]
BLAST of TCONS_00013894-protein vs. Swiss-Prot (Human)
Match: GBRAP (Gamma-aminobutyric acid receptor-associated protein OS=Homo sapiens GN=GABARAP PE=1 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.852e-75
Identity = 105/116 (90.52%), Postives = 112/116 (96.55%), Query Frame = 0 
Query:   85 MRWEYKEEHAFERRRSEGEKIRRKYPDRVPVIVEKSPKAKIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNTIPPTSATMGALYQEHHEEDFFLYVAYSDESVYG 200
            M++ YKEEH FE+RRSEGEKIR+KYPDRVPVIVEK+PKA+IGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNN IPPTSATMG LYQEHHEEDFFLY+AYSDESVYG
Sbjct:    1 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116
The following BLAST results are available for this feature:
BLAST of TCONS_00013894-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GBRAP1.852e-7590.52Gamma-aminobutyric acid receptor-associated protei... [more]
back to top