TCONS_00013873-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00013873-protein
Unique NameTCONS_00013873-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length443

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00013873-protein ID=TCONS_00013873-protein|Name=TCONS_00013873-protein|organism=Clytia hemisphaerica|type=polypeptide|length=443bp
MDFLSNMVQRNAEAVNHIIKPAGTAKIMSSADDISSWYEAVQLYEVNRID
EAIEKFKSVKQNARMLLNTGCCYLRKNDLQTAGESFGQAVKNDPHQALGF
FMLGLTQYFQNKLEDALKSFEKSLTLLRGNKFVDYRQLGFKFQLYACEIL
TNIAGTHLRLNDLAKAQEVIQQAYEQRADKKHERIINDVDRLKSKRPKLD
LFYPPKSEVFRPAKALVANVEKKDYLGASKVISTDSEEDCYACFSGIKDK
VIEQKKAEQNSPKQNKKLITKIEAMPEPAKKKSPETKKRVSAIPKGVLPQ
LSIDQPDGPSQQRSMSVGARPNKPLPVLIAPKKELPKLEPAVETKIEEKI
TATVEKTVESTPASSALATSDDIELEIQYNFISKVRLPKGFTIADLQNIA
SQQKVPTHLEFRLQDVLGRQSQLTEDGIKSLEQQKIHCYPTTS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007747XLOC_007747Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00013873TCONS_00013873Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom
IPR013026TPR-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 163..183
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 299..325
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 63..96
e-value: 11.0
score: 14.7
coord: 97..130
e-value: 0.057
score: 22.6
coord: 147..180
e-value: 67.0
score: 7.7
IPR019734Tetratricopeptide repeatPFAMPF13181TPR_8coord: 63..94
e-value: 0.094
score: 12.9
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 97..130
score: 8.231
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 63..96
score: 9.558
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 147..180
score: 6.136
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 28..291
e-value: 6.9E-24
score: 83.9
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 38..177
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 63..130
score: 15.156
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 147..180
score: 6.768

Blast
[Close]
BLAST of TCONS_00013873-protein vs. Swiss-Prot (Human)
Match: NCF2 (Neutrophil cytosol factor 2 OS=Homo sapiens GN=NCF2 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 5.762e-29
Identity = 70/230 (30.43%), Postives = 129/230 (56.09%), Query Frame = 0 
Query:   28 MSSADDISSWYEAVQLYEVNRIDEAIEKFKSVKQ-NARMLLNTGCCYLRKNDLQTAGESFGQAVKNDPHQALGFFMLGLTQYFQNKLEDALKSFEKSLTLLRGNKFVDYRQLGFKFQLYACEILTNIAGTHLRLNDLAKAQEVIQQAYEQRADKKHERIINDVDRLKSKRPKLDLFYP---PKSEVFRPAKALVANVEKKDYLGASKVISTDSEEDCYACFSGIKDKVIE 253
            MS  + IS W E V   +      A++ F +V+  ++R+  N GC Y    ++  A ++F +++  D H A+ +F  G+  Y   K + A+K  +++L  LRGN+ +DY+ LG +F+L+ACE+L NIA  + +  +  KA+E +  A   +++ +H +I    D+      K  L+ P   P  ++FRP +  VA + KKDYLG + V+++  ++D ++ F+ ++ +  E
Sbjct:    1 MSLVEAISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKI----DKAMECVWKQKLYEPVVIPVGKLFRPNERQVAQLAKKDYLGKATVVASVVDQDSFSGFAPLQPQAAE 226
The following BLAST results are available for this feature:
BLAST of TCONS_00013873-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NCF25.762e-2930.43Neutrophil cytosol factor 2 OS=Homo sapiens GN=NCF... [more]
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