TCONS_00013838-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00013838-protein
Unique NameTCONS_00013838-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length342

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00013838-protein ID=TCONS_00013838-protein|Name=TCONS_00013838-protein|organism=Clytia hemisphaerica|type=polypeptide|length=342bp
MQALFGKKKTPEQMLRQHQRTLTRSIRDLDRERTKMENQEKKVINDIKKM
AKEGQMDAVKIMAKDLVRTRRYVKKFILMKANLQAVSLKIQTLRSNNAMA
QAMKGCAKTMATMNKQLKLPQIQKIMMEFEKQSEIMDMKEEMMNDAIDDV
MGDEDDDEESDAIVSQVLDELGLGLTDQLSELPGAGGKLPAGQKAPSGQQ
AVAAGGGEDDDLQNRYVTVLQLFSRWTEICSVQISDHRDFKLGVLLSSLS
DLIYSPPPLQNHLRKKSSWSSSFWTKGRSPLARAAIALFGFNSFCLDTSK
EKKSVLLNNFRTTFSNLMYNSSKFKFEYPLYDKKRMDKKFKS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007733XLOC_007733Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00013838TCONS_00013838Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005024Snf7_fam
Vocabulary: Biological Process
TermDefinition
GO:0007034vacuolar transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007034 vacuolar transport
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 19..46
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 182..207
IPR005024Snf7 familyPFAMPF03357Snf7coord: 18..183
e-value: 4.4E-42
score: 143.5

Blast
[Close]
BLAST of TCONS_00013838-protein vs. Swiss-Prot (Human)
Match: CHM2A (Charged multivesicular body protein 2a OS=Homo sapiens GN=CHMP2A PE=1 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 6.589e-95
Identity = 147/189 (77.78%), Postives = 172/189 (91.01%), Query Frame = 0 
Query:    1 MQALFGKKKTPEQMLRQHQRTLTRSIRDLDRERTKMENQEKKVINDIKKMAKEGQMDAVKIMAKDLVRTRRYVKKFILMKANLQAVSLKIQTLRSNNAMAQAMKGCAKTMATMNKQLKLPQIQKIMMEFEKQSEIMDMKEEMMNDAIDDVMGDEDDDEESDAIVSQVLDELGLGLTDQLSELPGAGGKL 189
            M  LFG++KTPE++LRQ+QR L R++R+LDRER K+E QEKK+I DIKKMAK+GQMDAV+IMAKDLVRTRRYV+KF+LM+AN+QAVSLKIQTL+SNN+MAQAMKG  K M TMN+QLKLPQIQKIMMEFE+Q+EIMDMKEEMMNDAIDD MGDE+D+EESDA+VSQVLDELGL LTD+LS LP  GG L
Sbjct:    1 MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELSNLPSTGGSL 189
The following BLAST results are available for this feature:
BLAST of TCONS_00013838-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHM2A6.589e-9577.78Charged multivesicular body protein 2a OS=Homo sap... [more]
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