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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00013764-protein ID=TCONS_00013764-protein|Name=TCONS_00013764-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1626bp
MSSIHYKFRSSLEYDTITFDGQAVSLSELREAIMKQKKIAQSPNYTLEII
NAQTKEVYNTDESMVQKNSSVVVRRVPVQRLEDVTDGLTKEEAELTEMAL
AKLSTTANLADAKASEDDKIKAVMMQQGSGFDHTSYQKSIKAPPSYVCYR
CGGKGHFVRQCPTQGDPRYNKQQFARAPSGIPREYYMMKMKQEQEILDSY
RSIQGNTNFTPTVSSEIVDQTKVPSDLQCSLCKQLFKDAVVTPCCGVSYC
DECIRTYLVENDLVCMCGETTSPDNLIGNKSLRTSVSNFRNQKPTEMKST
VQQSMNANTALQSQANSQSNGPLNTIKDEPVDSPVPPSELSNDATNGTAH
MNVPSPAVATEAAGSITDSPKHSVKVEQPTVEQSALTVAASTALPTASVG
HTATSVPMQSLPASAHHIFSTAAHFRGTAGPAIYSNVQGTARPGFAPVIA
AQPTIVQQAPRIVQLPFQPGAQFVRQRLVPVAAPRFITAAPGLNQIHIAQ
PPTINTVNTLQQPGVDLSTLNRPIYNQPPQHAAQQAHSNAMKQSAAAAAA
AAHKQNLLSEEDFYKWKMQLKNRPVRHRSRSRSPRSPNDKRGRRRRYRSI
SPSDGSKKRYDSPADDSSQERKSSSKRKKDKMKRRHRDSSQDSQPDTSVK
QRSRGTLADKKRRIPDRIKREVDEFEFDNEMEFDEELRKLGKETTQQQTQ
QEARDSVTPTPDDDDTQQQVDVDDEKSPEPNQAPAENALALEGAEAEEQI
ETDENTPPLEHQNGAGEDVKEEKSNGESVEKGEEKVEKEGTEENEKTVPK
PKRKTKIVVKKKVTRVIKRKRDGQIISETITRNAGEANEKTESVLKKESP
SVKKVRLEGSEKTLVKRTVGNAKVVVKMTPDKKKELHKKRMADKSAAKAK
QLLAEVQAKKEAEKKQLLEKVNEAKDTKSVKDVKDSKEERKRKMEKYLLL
KKKAKEKAILERRKSAASAKSAEESDKTESVHNRSKEKIDKKSLLSDKER
KRPDQNFYKLGGDSKLKTISDASKKQLKENEERHSSSSDVRSKVNVAKDR
RKRGGVSDDESDSGDDRTSRRVVKETSSRSTRKVPESRRSRERERGESRE
HEKDRERERRRKEEEENRRREKEYERELREKKRMYKLQKEKEEMVERERQ
ALKDKERLERKLEKERQIRKDMEREKYEDEQRQIRKREDDRRDKRRYTTT
TTSERDTEEDSRSHRSSTSKKNKTGYVIQILDSEKERSGESSSEASEHQV
EKKRKKKSKKKKDKKKKKKREQEDSDESEADSSDDEEETKSKKKKRKHKS
RKHKKHSKKSKKHKKKSKKKKKKQEKDQDESDQEEEEANEGEDEEEGEDS
GSESKDKKGEKESSNEDDGSDSGDSKDGSDEEASSSNNSSPARKEENEKG
DGKEEESSSSEEKEVEQDDSEKVSKKKKDSLSPSKNETDKTESKSVGQKK
KNEKPDDSGKDKDKPTKTVVPEKVKRKRSSIGDEDLELDYNDDVTANDEI
DDVTEDALLYGDLGFADDEQANPDLTSGKESPSKKSDDECEEGEIVDDDL
FTTTATTKTKDTEETSDETTTEKLSENPTTNENETSTIFDEVDTEIDDAI
ENAMIGLDDECDTPVDQSEAEAETER Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
| GO:0004842 | ubiquitin-protein transferase activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0016567 | protein ubiquitination |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0016567 |
protein ubiquitination |
| cellular_component |
GO:0005634 |
nucleus |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0004842 |
ubiquitin-protein transferase activity |
| molecular_function |
GO:0008270 |
zinc ion binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 1091..1190 |
| None | No IPR available | COILS | Coil | Coil | coord: 1250..1281 |
| None | No IPR available | COILS | Coil | Coil | coord: 896..927 |
| None | No IPR available | COILS | Coil | Coil | coord: 1314..1344 |
| None | No IPR available | COILS | Coil | Coil | coord: 937..970 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 522..547 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 312..346 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 960..1626 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 916..942 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 571..810 |
| None | No IPR available | SUPERFAMILY | 57850 | RING/U-box | coord: 220..296 |
| IPR001878 | Zinc finger, CCHC-type | SMART | SM00343 | c2hcfinal6 | coord: 147..163
e-value: 1.4E-4
score: 31.2 |
| IPR001878 | Zinc finger, CCHC-type | GENE3D | 4.10.60.10 | | coord: 107..193
e-value: 2.2E-7
score: 30.5 |
| IPR001878 | Zinc finger, CCHC-type | PROSITE | PS50158 | ZF_CCHC | coord: 148..162
score: 10.394 |
| IPR001878 | Zinc finger, CCHC-type | SUPERFAMILY | 57756 | Retrovirus zinc finger-like domains | coord: 130..167 |
| IPR014891 | DWNN domain | SMART | SM01180 | DWNN_2 | coord: 4..77
e-value: 2.6E-33
score: 126.7 |
| IPR014891 | DWNN domain | PFAM | PF08783 | DWNN | coord: 4..77
e-value: 3.1E-24
score: 85.0 |
| IPR014891 | DWNN domain | PROSITE | PS51282 | DWNN | coord: 4..77
score: 25.098 |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | GENE3D | 3.30.40.10 | | coord: 210..316
e-value: 1.0E-11
score: 44.1 |
| IPR025829 | Zinc knuckle CX2CX3GHX4C | PFAM | PF13696 | zf-CCHC_2 | coord: 143..163
e-value: 3.5E-7
score: 29.8 |
| IPR003613 | U box domain | PROSITE | PS51698 | U_BOX | coord: 222..296
score: 9.476 |
| IPR001841 | Zinc finger, RING-type | CDD | cd00162 | RING | coord: 228..267
e-value: 2.79181E-6
score: 45.5144 |
Blast
BLAST of TCONS_00013764-protein vs. Swiss-Prot (Human)
Match: RBBP6 (E3 ubiquitin-protein ligase RBBP6 OS=Homo sapiens GN=RBBP6 PE=1 SV=1) HSP 1 Score: 256.144 bits (653), Expect = 1.269e-68 Identity = 172/543 (31.68%), Postives = 269/543 (49.54%), Query Frame = 0
Query: 1 MSSIHYKFRSSLEYDTITFDGQAVSLSELREAIMKQKKIAQSPNYTLEIINAQTKEVYNTDESMVQKNSSVVVRRVPVQRLEDV--TDGLTKEEAELT----------EMALAKLSTTANLADAKASEDDKIKAVMMQQGSGFDHTSYQKSIKAPP--SYVCYRCGGKGHFVRQCPTQGDPRYNKQQFARAPSGIPREYYMMKMKQEQEILDSYRSIQGNTN--FTPTVSSEIVDQTK--------------------VPSDLQCSLCKQLFKDAVVTPCCGVSYCDECIRTYLVEND-LVC-MCGET-TSPDNLIGNKSLRTSVSNFRNQKPT------EMKSTVQQSMNANTALQSQANSQSNGPLNTIKDEPVDSPVPPSELSNDATNGTAHMNVPSPAVATEAAGSITDSPKHSVKVEQPTVEQSALTVAASTALPTASVGHTATSVPMQS-----LPASAHHIFSTAAHFRGTAGPAIYSNVQGTARPGFAPVIAAQPTIVQQAPRIVQLPFQPGAQFVRQRLVPVAAP-RFITAAPG 492
MS +HYKF S L YDT+TFDG +SL +L++ IM ++K+ ++ + L+I NAQTKE Y D +++ KNSSV+VRR+P+ ++ T +++ E + ++LA+L+ TANLA+A ASE+DKIKA+M Q G +D +Y K PP SY C+RCG GH+++ CPT GD + + +GIPR + MM++K + ++ NT PT+ +E K +P +L C +CK + DAVV PCCG SYCDECIRT L+E+D C C + SPD LI NK LR +V+NF+N+ ++ +Q P++ +D P+ PV T+ + H P+P++++ + + +P S P+ + V TA + SV + P + LPA+A + H +GT+ AI + ++ G+ + P+++ G + +L+P P R TA PG
Sbjct: 1 MSCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKL-KAADCDLQITNAQTKEEYTDDNALIPKNSSVIVRRIPIGGVKSTSKTYVISRTEPAMATTKAIDDSSASISLAQLTKTANLAEANASEEDKIKAMMSQSGHEYDPINYMKKPLGPPPPSYTCFRCGKPGHYIKNCPTNGDKNFESGPRIKKSTGIPRSF-MMEVKDP----NMKGAMLTNTGKYAIPTIDAEAYAIGKKEKPPFLPEEPSSSSEEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGYTKRLRKQLPPPPPPIPPPRPLIQRNLQPLMRSPISRQQD-PLMIPV---------TSSSTH---PAPSISSLTSNQSSLAPPVS---GNPS--SAPAPVPDITATVSISVHSEKSDGPFRDSDNKILPAAAL----ASEHSKGTSSIAITALME---EKGYQVPVLGTPSLL-------------GQSLLHGQLIPTTGPVRINTARPG 499
The following BLAST results are available for this feature:
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