TCONS_00013744-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00013744-protein
Unique NameTCONS_00013744-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length178

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00013744-protein ID=TCONS_00013744-protein|Name=TCONS_00013744-protein|organism=Clytia hemisphaerica|type=polypeptide|length=178bp
MLQSRIISSLSSCSNALQCCRTLHVSLVVNHNPGLKKKSKVAVDPKKLQR
QKERQEAKLRKQVIQPPMDPDSIPDPLWFNEDRQRPKLQLSEEETEQRVL
LQKNWSKYQMRKHVDDLRLMRNKLKCRNDALRELKKESEFLYNEALKVDK
VNFPITLKGPMETPPLADYLPPDFVDEK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007674XLOC_007674Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00013744TCONS_00013744Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019192Ribosomal_L28/L40_mit
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 114..137
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..79
IPR019192Ribosomal protein L28/L40, mitochondrialPFAMPF09812MRP-L28coord: 36..173
e-value: 6.9E-28
score: 97.7

Blast
[Close]
BLAST of TCONS_00013744-protein vs. Swiss-Prot (Human)
Match: RM40 (39S ribosomal protein L40, mitochondrial OS=Homo sapiens GN=MRPL40 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.826e-16
Identity = 49/128 (38.28%), Postives = 77/128 (60.16%), Query Frame = 0 
Query:   49 QRQKERQEAKLRK--QVIQPPMDPDSIPDPLWF-NEDRQRPKLQLSEEETEQRVLLQKNWSKYQMRKHVDDLRLMRNKLKCRNDALRELKKESEFLYNEALKVDKVNFPITLKGPMETPPLADYLPPD 173
            Q  KER + K+RK  +  Q  +  +    PL F ++ R+RP+++L+ EETE+R LL K WS Y+ ++   +   +R  L+ + +AL EL+ ES  L+ EA+K D   FP   +GP  TPP+ +Y PP+
Sbjct:   62 QEAKERLKRKIRKLEKATQELIPIEDFITPLKFLDKARERPQVELTFEETERRALLLKKWSLYKQQERKMERDTIRAMLEAQQEALEELQLESPKLHAEAIKRDPNLFPFEKEGPHYTPPIPNYQPPE 189
The following BLAST results are available for this feature:
BLAST of TCONS_00013744-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RM401.826e-1638.2839S ribosomal protein L40, mitochondrial OS=Homo s... [more]
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