HMG box containing transcription factor TCF (polypeptide) - C. hemisphaerica

Overview
NameHMG box containing transcription factor TCF
Unique NameTCONS_00013716-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length484

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00013716-protein ID=TCONS_00013716-protein|Name=HMG box containing transcription factor TCF|organism=Clytia hemisphaerica|type=polypeptide|length=484bp
MPQLPTSTAEEYGAEDEIKQYTQEEGEESDSSTVDVVNDIKDDLLNEDGR
ESVKGDEPLFRTTSNRYNKDSPGLYGRPAPVIVGPHHNYYDQSNGYRSSS
NQQQHGNSYQSTTQIRMPMYQRGSGDERYSYEHGSWPSQVPVHGYAVGYG
AGGVPKNYNYRYPPHPGVAYYAPGHGYPGMTGRPVKEPKRPHVKKPLNAF
MLFMKEQRPKIAAEYTLKESAAINQILGKRWHALDKSEQAKYYELARKER
AIHMQLYPGWSARDNYAQLGRKKKRPRDKNEEMNPKKCRARYGLDRQEQW
CKPCRRKKKCIRFIVGADGETTEVPDKEQQTEINSDSDNENTNAENRSSA
PTNNNTTDSLKENLSERVTMATTKENNQNHPHHHQQQNSLNNNNNNINIL
SATTMVNAAAPAVPQSSNPHAQSTPSTYHQMKTETPLYASIGHSSTYTSS
GNNTIGYSAPQPGSRSETSTIDSSVLKTISAPCS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007658XLOC_007658Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00013716TCONS_00013716Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom
IPR027397Catenin_binding_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 192..262
e-value: 2.0E-20
score: 83.9
IPR009071High mobility group box domainGENE3D1.10.30.10coord: 189..282
e-value: 2.0E-22
score: 79.0
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 193..260
e-value: 1.8E-20
score: 73.0
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 193..261
score: 16.172
IPR009071High mobility group box domainSUPERFAMILY47095HMG-boxcoord: 181..261
NoneNo IPR availableSMARTSM01366c_clamp_2coord: 285..315
e-value: 1.9E-15
score: 67.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..112
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 321..359
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 443..484
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 375..396
NoneNo IPR availableCDDcd01388SOX-TCF_HMG-boxcoord: 192..263
e-value: 5.73886E-36
score: 127.029
IPR027397Catenin binding domainGENE3D4.10.900.10coord: 1..54
e-value: 2.6E-6
score: 26.7

Blast
[Close]
BLAST of HMG box containing transcription factor TCF vs. Swiss-Prot (Human)
Match: TF7L2 (Transcription factor 7-like 2 OS=Homo sapiens GN=TCF7L2 PE=1 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 4.274e-51
Identity = 88/140 (62.86%), Postives = 103/140 (73.57%), Query Frame = 0 
Query:  196 PLNAFMLFMKEQRPKIAAEYTLKESAAINQILGKRWHALDKSEQAKYYELARKERAIHMQLYPGWSARDNYA--QLGRKKKRPRDKNEE----MN-------------PKKCRARYGLDRQEQWCKPCRRKKKCIRFIVG 316
            PLNAFML+MKE R K+ AE TLKESAAINQILG+RWHAL + EQAKYYELARKER +HMQLYPGWSARDNY   +  ++ K+P + NE     +N             PKKCRAR+GLD+Q  WC PCRRKKKC+R+I G
Sbjct:  353 PLNAFMLYMKEMRAKVVAECTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKRDKQPGETNEHSECFLNPCLSLPPITDLSAPKKCRARFGLDQQNNWCGPCRRKKKCVRYIQG 492
The following BLAST results are available for this feature:
BLAST of HMG box containing transcription factor TCF vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TF7L24.274e-5162.86Transcription factor 7-like 2 OS=Homo sapiens GN=T... [more]
back to top