TCONS_00013554-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00013554-protein
Unique NameTCONS_00013554-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length155

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00013554-protein ID=TCONS_00013554-protein|Name=TCONS_00013554-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
MSGCLDNANCPEINCPDLSEKRNQLASIAAGALFFIGWWFIIDAAANTPL
DKNAYHTCGVVSTIALFMINAVSNAQVRGDTFEGGCLGQTGARIWLLLGF
LLGFGGLIGACWVLFGDYVTKDVPSTWPGVAVFLQNSFIFFSALVFKFGR
TEDDF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007577XLOC_007577Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00013554TCONS_00013554Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007919UPF0220
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007919Uncharacterised protein family UPF0220PFAMPF05255UPF0220coord: 15..155
e-value: 3.1E-45
score: 153.6

Blast
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BLAST of TCONS_00013554-protein vs. Swiss-Prot (Human)
Match: TM50A (Transmembrane protein 50A OS=Homo sapiens GN=TMEM50A PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.926e-66
Identity = 98/156 (62.82%), Postives = 114/156 (73.08%), Query Frame = 0 
Query:    1 MSGCLDNANCPEINCPDLSEKRNQLASIAAGALFFIGWWFIIDAAANTPLDK---NAYHTCGVVSTIALFMINAVSNAQVRGDTFEGGCLGQTGARIWLLLGFLLGFGGLIGACWVLFGDYVTKDVPSTWPGVAVFLQNSFIFFSALVFKFGRTED 153
            MSG L+   C E  C D  EKRN +ASIAAG LFF GWW IIDAA   P  K   ++YH CGV++TIA  MINAVSN QVRGD++  GCLGQTGARIWL +GF+L FG LI + W+LFG YV K+    +PG+AVF QN+FIFF  LVFKFGRTED
Sbjct:    1 MSGFLEGLRCSE--CIDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYPTMKDFNHSYHACGVIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFVGFMLAFGSLIASMWILFGGYVAKEKDIVYPGIAVFFQNAFIFFGGLVFKFGRTED 154
The following BLAST results are available for this feature:
BLAST of TCONS_00013554-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TM50A5.926e-6662.82Transmembrane protein 50A OS=Homo sapiens GN=TMEM5... [more]
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