TCONS_00013398-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00013398-protein
Unique NameTCONS_00013398-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length844

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00013398-protein ID=TCONS_00013398-protein|Name=TCONS_00013398-protein|organism=Clytia hemisphaerica|type=polypeptide|length=844bp
MNWIYFTKMDINVCLTVMTSWHLAYGQRLLVFYENVIFDYDGPTFNGDIR
NDYRFSSKNKTSFIRYHDDTLEHCQDIWRNLSFNSLQKDYDGIISLTKSQ
NLLSKQLSSSNEVLDILYQFESTFSRLKWMLSNDRQYYSCVWLSPLFIST
VSAIFNILRTKNLAVLIEDNYCSNFLMRDIQTSLLMLNGNKTKTIFNPIY
VGLAPHQEARNRDQFYDLLVEGQTDFLMLLQRDLHKHVFKMAAFFSLLGP
HQRWLIPNFDQNEPLGFGNVLPGQILSFQLKTNDNFGVTKLADVVGWISE
TFQHFRNDQSLIHKSSILYSTLMRRMYHSNIQYRQSPLEIFYYNGENQGE
WQSNQGFMRDNKLTFYGDVLNILRSSETNSLTDRIRIVTINDAPYTFVDG
KFYDADNDMCSDGFLCQIPIQTDSSRQLNYQKSCCIGFIPDIFRMVIKNV
AIPFEMYVVADGKYGGFKNGTWNGMIADVAYGKADMAMAAITITKERSDS
VSFSAPFMFDQTGIITKPAVVELDFLNWEFLAPLSKELQIYLVILVVVCM
LLLYFFENTIYFYIYHHHGFSHKAYYSFLEGLSHISGVTLQRDLGGKHPL
RPAARIMCLFFAIGMVIIVSTYTAVLAAQSLKSKEREPLQGGSQDVRFRN
PTNEFRFGILRDSSYESFFKNGETDLLKRMSVFMEPYNYDTLAEGMDMVR
NGTLQASFSDFAFLHFYLSKDRSCQLKLVKDKLYFFGLGFPMAKDFPYRE
LINQGILKFTSKDMIAELQAKWFDNICQPNFFVTSNTQLSIKFFGGLVFI
LAMTIIGALLFLYPEHLWWKYFHEKVLKLMKRKILKSELKSPVT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007486XLOC_007486Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00013398TCONS_00013398Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019594Glu/Gly-bd
IPR001320Iontro_rcpt
IPR001638Solute-binding_3/MltF_N
Vocabulary: Molecular Function
TermDefinition
GO:0005234extracellular-glutamate-gated ion channel activity
GO:0004970ionotropic glutamate receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0005234 extracellular-glutamate-gated ion channel activity
molecular_function GO:0004970 ionotropic glutamate receptor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainSMARTSM00918Lig_chan_Glu_bd_2coord: 419..481
e-value: 2.9E-4
score: 30.1
IPR001320Ionotropic glutamate receptorSMARTSM00079GluR_14coord: 422..775
e-value: 1.2E-8
score: 34.1
IPR001320Ionotropic glutamate receptorPFAMPF00060Lig_chancoord: 540..803
e-value: 8.4E-7
score: 28.8
NoneNo IPR availableGENE3D3.40.190.10coord: 681..782
e-value: 2.0E-8
score: 33.4
NoneNo IPR availableGENE3D1.10.287.70coord: 533..680
e-value: 1.2E-11
score: 43.7
NoneNo IPR availableGENE3D3.40.190.10coord: 380..532
e-value: 4.5E-22
score: 77.7
NoneNo IPR availableSUPERFAMILY53850Periplasmic binding protein-like IIcoord: 434..529
coord: 656..774
coord: 383..402
IPR001638Solute-binding protein family 3/N-terminal domain of MltFPFAMPF00497SBP_bac_3coord: 467..774
e-value: 7.1E-21
score: 74.6

Blast
[Close]
BLAST of TCONS_00013398-protein vs. Swiss-Prot (Human)
Match: NMDE2 (Glutamate receptor ionotropic, NMDA 2B OS=Homo sapiens GN=GRIN2B PE=1 SV=3)

HSP 1 Score: 180.644 bits (457), Expect = 1.621e-46
Identity = 155/633 (24.49%), Postives = 279/633 (44.08%), Query Frame = 0 
Query:  226 FLMLLQRDLHKHVFKMAAFFSLLGPHQRWLIPNFDQNEPLGFGNVLPGQILSFQLKTNDNFGVTKLADVVGWISETFQHFRNDQSLI-HKSSILYSTLMRRMYHSNI--------------------QYRQSP-LEIFYYNGENQGEWQSNQGFMRDNKLTFYGDVLNILRSSETNSLTDRIRIVTINDAPYTFVDGKFYDADNDMC-SDGFLCQIPIQTD--SSRQLNYQKSCCIGFIPDIFRMVIKNVAIPFEMYVVADGKYGGFKNGTWNGMIADVAYGKADMAMAAITITKERSDSVSFSAPFMFDQTGIITKPAVVELDFLNWEFLAPLSKELQ----IYLVILVVVCMLLLYFFENTIYFYIYHHHGFSHKAYYSFLEGLSHISGVTLQRDLGGKHPLRPAARIMCLFFAIGMVIIVSTYTAVLAAQSLKSKEREPLQGGSQDVRFRNPTN---EFRFGILRDSSYESFFKNGETDLLKRMSVFMEPYNYDTLAEGMDMVRNGTLQASFSDFAFLHFYLSKDRSCQLKLVKDKLYFFGLGFPMA--KDFPYRELINQGILKFTSKDMIAELQAKWFDNICQPNFFVTSNTQLSIKFFGGLVFILAMTIIGALLFLYPEHL-WWKYFH 823
             L+   ++   ++F++A    L G    W++P+    +        P  ++S      D     ++ D +  I+       ++ S I    S  Y+T  +R+Y SN+                     Y+  P L I   N E +  W+   G  +D  L     V   +         D + IVT+ +AP+  V+    D  +  C  +   CQ  I T+  +  +  Y K CC GF  DI + + K+V   +++Y+V +GK+G   NGTWNGMI +V   +A MA+ ++TI +ERS+ V FS PF+  +TGI    +          FL P S ++     + L+I+  V + +  +F    Y              ++  + +  + G+     +  ++P    ++IM   +A   VI +++YTA LAA  ++ +  + + G S D +F+ P +    FRFG + + S E   +N   +    M  +M  +N   + + +  ++ G L A   D A L++   +D  C+L  +     F   G+ +A  KD  ++  ++  IL+      + EL+A W   IC        ++QL I    G+ ++L   +  +L+    EHL +W++ H
Sbjct:  228 ILLYCTKEEATYIFEVANSVGLTGYGYTWIVPSLVAGDTDTVPAEFPTGLISVSYDEWDYGLPARVRDGIAIITTAASDMLSEHSFIPEPKSSCYNTHEKRIYQSNMLNRYLINVTFEGRNLSFSEDGYQMHPKLVIILLNKERK--WE-RVGKWKDKSLQMKYYVWPRMCPETEEQEDDHLSIVTLEEAPFVIVES--VDPLSGTCMRNTVPCQKRIVTENKTDEEPGYIKKCCKGFCIDILKKISKSVKFTYDLYLVTNGKHGKKINGTWNGMIGEVVMKRAYMAVGSLTINEERSEVVDFSVPFI--ETGISVMVSRSNGTVSPSAFLEPFSADVWVMMFVMLLIVSAVAVFVFEYFSPVGYNRCLADGREPGGPSFTIGKAIWLLWGLVFNNSVPVQNPKGTTSKIMVSVWAFFAVIFLASYTANLAAFMIQEEYVDQVSGLS-DKKFQRPNDFSPPFRFGTVPNGSTERNIRNNYAE----MHAYMGKFNQRGVDDALLSLKTGKLDAFIYDAAVLNYMAGRDEGCKLVTIGSGKVFASTGYGIAIQKDSGWKRQVDLAILQLFGDGEMEELEALWLTGICHNEKNEVMSSQLDIDNMAGVFYMLGAAMALSLITFICEHLFYWQFRH 848
The following BLAST results are available for this feature:
BLAST of TCONS_00013398-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NMDE21.621e-4624.49Glutamate receptor ionotropic, NMDA 2B OS=Homo sap... [more]
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