TCONS_00013392-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00013392-protein
Unique NameTCONS_00013392-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length665

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00013392-protein ID=TCONS_00013392-protein|Name=TCONS_00013392-protein|organism=Clytia hemisphaerica|type=polypeptide|length=665bp
MSKREDIAALQFELTKINDELNSINDQMKNLLVRQEELRHRKKKLSKELL
DSEKTQQNDILKFQWDSDNFEWSESMKTTMKEKFKIENFRPLQKQTMNVT
MSNYDCMLIMPTGGGKSLCFQLPAVVSNGFTLVISPLISLMEDQLMALDR
LGINAALLSSSIPTKDVTIIQNLLVDKECPYKLVYVTPERIAKSKRFMAK
LEKAYAVGNVSRIVIDEVHCASHWGHDFRPDYKVLGILKRQFPKLPILGL
TATATKKVLDDVKEMLNLDRTCMVFRASFNRPNLFYEVHQTCLDSKDLIK
EVSNVIKRRFKAMSGIIYCFSRKDSEEVAHGLKERGITAHCYHADLDPKL
KSYIHQQWTNGEIQVVVATIAFGMGIDKPNVRFVIHFSISKSIENYYQES
GRAGRDDQKAWCILYFRFQDIFRQSSMVFTEKMGLHNLYLMINYCLNKTT
CRRKQIGLFFSENWEANQCKETCDVCFEKAETKDLILNKDALNLLDILEN
AKYKQERLTPLKLVELWLGKGKVSLRKKQASYPKEICELIVAKLIAEQIL
TEDFHFTPYNTITYILPGPRKHLVTTLKKRGGDIIFPIPCNSQMGKDGCK
KEDDESTNQSTRKRVLSESDDENVKVKMEEEFKDLTSPVTSSLKKQKTNA
IIIDSDDNDEDDFVL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007483XLOC_007483Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00013392TCONS_00013392Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014001Helicase_ATP-bd
IPR001650Helicase_C
IPR011991WHTH_DNA-bd_dom
IPR032284RecQ_Zn-bd
IPR011545DEAD/DEAH_box_helicase_dom
IPR004589DNA_helicase_ATP-dep_RecQ
IPR002464DNA/RNA_helicase_DEAH_CS
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO:0008026ATP-dependent helicase activity
Vocabulary: Biological Process
TermDefinition
GO:0006310DNA recombination
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006310 DNA recombination
molecular_function GO:0005524 ATP binding
molecular_function GO:0008026 ATP-dependent helicase activity
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 7..55
NoneNo IPR availableGENE3D3.40.50.300coord: 8..287
e-value: 5.5E-32
score: 110.4
NoneNo IPR availableGENE3D3.40.50.300coord: 288..480
e-value: 2.0E-48
score: 164.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 594..621
NoneNo IPR availableCDDcd00046DEXDccoord: 105..253
e-value: 9.60337E-19
score: 82.7704
NoneNo IPR availableCDDcd00079HELICccoord: 296..415
e-value: 1.84346E-28
score: 110.02
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 85..289
e-value: 9.4E-31
score: 118.2
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 97..272
score: 23.838
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 326..407
e-value: 2.3E-25
score: 100.2
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 302..405
e-value: 7.0E-16
score: 58.5
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 297..446
score: 18.844
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 481..580
e-value: 2.5E-15
score: 56.0
IPR032284ATP-dependent DNA helicase RecQ, zinc-binding domainPFAMPF16124RecQ_Zn_bindcoord: 419..476
e-value: 6.4E-10
score: 39.5
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 91..258
e-value: 1.3E-18
score: 67.3
IPR004589DNA helicase, ATP-dependent, RecQ typeTIGRFAMTIGR00614TIGR00614coord: 80..529
e-value: 3.9E-156
score: 518.4
IPR002464DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved sitePROSITEPS00690DEAH_ATP_HELICASEcoord: 211..220
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 128..422

Blast
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BLAST of TCONS_00013392-protein vs. Swiss-Prot (Human)
Match: RECQ1 (ATP-dependent DNA helicase Q1 OS=Homo sapiens GN=RECQL PE=1 SV=3)

HSP 1 Score: 585.489 bits (1508), Expect = 0.000e+0
Identity = 291/577 (50.43%), Postives = 398/577 (68.98%), Query Frame = 0 
Query:    7 IAALQFELTKINDELNSINDQMKNLLVRQEELRHRKKKLSK------ELLDSEKTQQNDILKFQWDSDNFEWSESMKTTMKEKFKIENFRPLQKQTMNVTMSNYDCMLIMPTGGGKSLCFQLPAVVSNGFTLVISPLISLMEDQLMALDRLGINAALLSSSIPTKDVTIIQNLLVDKECPYKLVYVTPERIAKSKRFMAKLEKAYAVGNVSRIVIDEVHCASHWGHDFRPDYKVLGILKRQFPKLPILGLTATATKKVLDDVKEMLNLDRTCMVFRASFNRPNLFYEVHQTCLDSKDLIKEVSNVIKRRFKAMSGIIYCFSRKDSEEVAHGLKERGITAHCYHADLDPKLKSYIHQQWTNGEIQVVVATIAFGMGIDKPNVRFVIHFSISKSIENYYQESGRAGRDDQKAWCILYFRFQDIFRQSSMVFTEKMGLHNLYLMINYCLNKTTCRRKQIGLFFSENWEANQCKETCDVCFEKAETKDLILNKDALNLLDILENAKYKQERLTPLKLVELWLGKGKVSLRKK---QASYPKEICELIVAKLIAEQILTEDFHFTPYNTITYILPGPRKHLV 574
            ++AL  EL  I  EL+++  Q++ L  RQ+EL  +KK L+K      E  D+  + + D     W+ ++F WS  +K  ++  FK+E FRPLQ +T+NVTM+  +  L+MPTGGGKSLC+QLPA+ S+GFTLVI PLISLMEDQLM L +LGI+A +L++S   + V  +   +V+K    KL+YVTPE+IAKSK FM++LEKAY     +RI +DEVHC S WGHDFRPDYK LGILKRQFP   ++GLTATAT  VL D +++L +++ C  F ASFNRPNL+YEV Q   +++D I+++  +I  R+K  SGIIYCFS+KDSE+V   L+  GI A  YHA+L+P+ K+ +H++W+  EIQVVVAT+AFGMGIDKP+VRFVIH S+SKS+ENYYQESGRAGRDD KA CILY+ F DIFR SSMV  E +G   LY M++YC N + CRR  +   F E W +  C + CD C + +  +   + +   +L+ IL+ A+   E+LTPLKL++ W+GKG   LR       + P+E  E I+A  + +Q L ED+ FT Y TI+Y+  GP+ +L+
Sbjct:    4 VSALTEELDSITSELHAVEIQIQELTERQQELIQKKKVLTKKIKQCLEDSDAGASNEYDSSPAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEK-CFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMVVMENVGQQKLYEMVSYCQNISKCRRVLMAQHFDEVWNSEACNKMCDNCCKDSAFERKNITEYCRDLIKILKQAEELNEKLTPLKLIDSWMGKGAAKLRVAGVVAPTLPREDLEKIIAHFLIQQYLKEDYSFTAYATISYLKIGPKANLL 579
The following BLAST results are available for this feature:
BLAST of TCONS_00013392-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RECQ10.000e+050.43ATP-dependent DNA helicase Q1 OS=Homo sapiens GN=R... [more]
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