TCONS_00013291-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00013291-protein
Unique NameTCONS_00013291-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length631

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00013291-protein ID=TCONS_00013291-protein|Name=TCONS_00013291-protein|organism=Clytia hemisphaerica|type=polypeptide|length=631bp
MEHMGAHDSPSKYLQVGLPESNHANGNVTSPRNDSSTSLSSKMKRMLSSP
KVTRGKAAPSPNRTFGVTLDFLNDRDKTEVPLIVSRICDYLKMHGLKQEG
LFRVNGNMKVVERLKNAFDKCGDADLEETGDVPAAASLLKMFLRELSEPV
IPDNMQPVFIQIQDQYCKEKDKAIPLFKELVKRMPPANAHLLKYLCTFML
TISNGSETNKMTPLALAIVFGPNIFRCGEGLEGLKDQAYVNAVLLALLQE
HEEIFLIDNAMFKDSKPRSIPEKPVAYYDTKKMKKDGGSQSIPEPPLHLG
SNLSSEDRMDKSPRRSNSARSPKRTTSSNRRSPRHDSVRAQRTNSAKKRN
QTEPERSRSPSSYTHLSSPLSKQLVNNTISSTVKEHLFGPGMLISSTESI
ETNDRTHESAGGDDSHELAVYPSVMERVKKFSMDSPTHPNVTPTPNKKPK
PSSKNSLKKTRSGPTPIQPSMSNVTDKDLDFIQTSGRQPLQSLTHRRAPS
QKRRPPSLNRRSAARESTSSDDYRETRRPSAGNISNTPQQGDTIYSIPNK
NQSNRREPTTPSMERLELQQKRDDQITGRNHNTMNERQEHEISPGELKKR
ISSLKRVISNFENEFMETNGRKVHMLSLSHY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007428XLOC_007428Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00013291TCONS_00013291Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000198RhoGAP_dom
IPR008936Rho_GTPase_activation_prot
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000198Rho GTPase-activating protein domainSMARTSM00324RhoGAP_3coord: 78..252
e-value: 1.7E-54
score: 197.1
IPR000198Rho GTPase-activating protein domainPFAMPF00620RhoGAPcoord: 81..228
e-value: 8.1E-41
score: 139.3
IPR000198Rho GTPase-activating protein domainPROSITEPS50238RHOGAPcoord: 67..255
score: 38.912
NoneNo IPR availableGENE3D1.10.555.10coord: 16..267
e-value: 8.4E-59
score: 198.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 433..564
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 283..370
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..60
IPR008936Rho GTPase activation proteinSUPERFAMILY48350GTPase activation domain, GAPcoord: 61..255

Blast
[Close]
BLAST of TCONS_00013291-protein vs. Swiss-Prot (Human)
Match: FA13A (Protein FAM13A OS=Homo sapiens GN=FAM13A PE=1 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 2.706e-41
Identity = 88/236 (37.29%), Postives = 140/236 (59.32%), Query Frame = 0 
Query:   26 GNVTSPRNDSSTSLSSKMKRMLSSPKVTRGKAAPSPNRTFGVTLDFLNDRDKTE--VPLIVSRICDYLKMHGLKQEGLFRVNGNMKVVERLKNAFDKCGDADLEETGDVPAAASLLKMFLRELSEPVIPDNMQPVFIQI-QDQYCKEKDKAIPLFKELVKRMPPANAHLLKYLCTFMLTISNGSETNKMTPLALAIVFGPNIFRCGEGLEGLKDQAYVNAVLLALLQEHEEIFLID 258
            G +   ++ ++  L   MK++++ P     +   +  + FGV+L  L  +  TE  +P +V  I +YL  HGL QEGLFRVNGN+KVVE+L+  F+     +L + GDV +AASLLK+FLREL + +I   +QP FIQ+ QD     ++ ++   ++L+K +P  +  LLKYLC F+  ++     N+M    LA VFGPN F    GLEG+K+Q   N ++  +L+ +  +F ++
Sbjct:    4 GALAICQSKAAVRLKEDMKKIVAVP--LNEQKDFTYQKLFGVSLQELERQGLTENGIPAVVWNIVEYLTQHGLTQEGLFRVNGNVKVVEQLRLKFESGVPVELGKDGDVCSAASLLKLFLRELPDSLITSALQPRFIQLFQDGRNDVQESSL---RDLIKELPDTHYCLLKYLCQFLTKVAKHHVQNRMNVHNLATVFGPNCFHVPPGLEGMKEQDLCNKIMAKILENYNTLFEVE 234
The following BLAST results are available for this feature:
BLAST of TCONS_00013291-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FA13A2.706e-4137.29Protein FAM13A OS=Homo sapiens GN=FAM13A PE=1 SV=2[more]
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