boule-like 1c (polypeptide) - C. hemisphaerica

Overview
Nameboule-like 1c
Unique NameTCONS_00013253-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length347

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00013253-protein ID=TCONS_00013253-protein|Name=boule-like 1c|organism=Clytia hemisphaerica|type=polypeptide|length=347bp
MVAQNSGKAKLESSSPAMTAEHTTLTRMNSLNKNFKNLTIQPPRNDDMKC
QCAHYFNTECMTDPLLSSENIPSTVKSVSPDSSCTFGTHYPNRIFVGHLP
GKANATDLADFFRTYGTVLEGKVVLDSFGRSRRFGFVTFATQDDVQKVLS
KCPFFFKGKKINVGPAVKKMFGAEFSPPTSPLGGGGAQTTETGSELSSSE
VEDKESSGSTIVTVPPVNEPKDPTSPNTPKSGNVWLKVNAKPKISPKKET
HTTKPMYHPSHHFVYPTVTSTPPVQSHISPYQQGGAGNMQFYYPPVYTTN
QPFNYQGPYYTQSPVPYYENGQAYFLKPVTNYGAPQTMYLPGSLTVA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007396XLOC_007396Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00013253TCONS_00013253Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 93..164
e-value: 2.5E-19
score: 80.2
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 94..153
e-value: 2.7E-13
score: 49.4
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 92..168
score: 15.238
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 84..173
NoneNo IPR availableGENE3D3.30.70.330coord: 89..170
e-value: 1.4E-17
score: 63.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 175..234

Blast
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BLAST of boule-like 1c vs. Swiss-Prot (Human)
Match: BOLL (Protein boule-like OS=Homo sapiens GN=BOLL PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 5.300e-22
Identity = 51/116 (43.97%), Postives = 68/116 (58.62%), Query Frame = 0 
Query:   79 SPDSSCTFGTHYPNRIFVGHLPGKANATDLADFFRTYGTVLEGKVVLDSFGRSRRFGFVTFATQDDVQKVLSKCPFF-FKGKKINVGPAVKKMFGAEFSPPTSPLGGGGAQTTETG 193
            +P S+  +GT  PNRIFVG +  K N +DL  FF  YG+V E K+V D  G S+ +GFVTF TQ+D QK+L +     +K KK+N+GPA++K           P  G    TT TG
Sbjct:   20 NPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPAIRKQQVGIPRSSIMPAAGTMYLTTSTG 135
The following BLAST results are available for this feature:
BLAST of boule-like 1c vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BOLL5.300e-2243.97Protein boule-like OS=Homo sapiens GN=BOLL PE=1 SV... [more]
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