TCONS_00013206-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00013206-protein
Unique NameTCONS_00013206-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length351

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00013206-protein ID=TCONS_00013206-protein|Name=TCONS_00013206-protein|organism=Clytia hemisphaerica|type=polypeptide|length=351bp
MECALERKGSWLFHLIWDMEKMASWELFLIKILLPIMTGFMIEDVLQRNP
VQVQPTKQQFYDVDNSMEILSKTRGSFSPEIGTRALAKSLQESQFKLHAN
YHRLTSPDYLRHLNPKFVTPLHPESALQCYCCTFKSYTNASNFYGCTTSK
YYQFSQRFGGGQKKRRNLFTRYQTLQLESRFHKQRYLSAVEREHLASILN
LTATQVKIWFQNHRYKHKRFEQSAKYIENENERLQQQQQWGAEFDEIDIE
HHEIDEAPDVEKYSCEDEELNVEKLPKLSPNFDLDLLNLEQNDKETGPRL
YKNERDTKTFQSIEKRSRNKSLVDQSDLVNEREILSQKETDAKNTIIWRP
F
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007385XLOC_007385Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00013206TCONS_00013206Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020479Homeobox_metazoa
IPR001356Homeobox_dom
IPR017970Homeobox_CS
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 217..237
NoneNo IPR availableGENE3D1.10.10.60coord: 138..219
e-value: 3.5E-21
score: 74.6
NoneNo IPR availableCDDcd00086homeodomaincoord: 163..219
e-value: 1.41204E-17
score: 74.5872
IPR020479Homeobox domain, metazoaPRINTSPR00024HOMEOBOXcoord: 184..195
score: 40.61
coord: 209..218
score: 68.82
coord: 199..209
score: 63.5
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 162..224
e-value: 3.0E-21
score: 86.6
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 163..219
e-value: 3.5E-19
score: 68.3
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 160..220
score: 18.69
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 195..218
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 147..221

Blast
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BLAST of TCONS_00013206-protein vs. Swiss-Prot (Human)
Match: NKX22 (Homeobox protein Nkx-2.2 OS=Homo sapiens GN=NKX2-2 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.363e-21
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 0 
Query:  159 GGG----QKKRRNLFTRYQTLQLESRFHKQRYLSAVEREHLASILNLTATQVKIWFQNHRYKHKR 219
            GGG    ++KRR LF++ QT +LE RF +QRYLSA EREHLAS++ LT TQVKIWFQNHRYK KR
Sbjct:  121 GGGDAGKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKR 185
The following BLAST results are available for this feature:
BLAST of TCONS_00013206-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NKX222.363e-2167.69Homeobox protein Nkx-2.2 OS=Homo sapiens GN=NKX2-2... [more]
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