TCONS_00013197-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00013197-protein
Unique Name	TCONS_00013197-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	847

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00013197-protein ID=TCONS_00013197-protein|Name=TCONS_00013197-protein|organism=Clytia hemisphaerica|type=polypeptide|length=847bp
MKKVPSILLVTLIAVIDLLACILIFVLLEDQKEIGDEIFSFSYGGSTFDL
VIWSCFRLCIFLGASIGLVRNPDSVKKFRKSTKMMVYYGCGQAIYVVLKI
MFFTEYNMDKMGKRVWLLIGISLFTCLTPYIGWKIYADVPIVKRKQGFTS
INDDGDDTDSIKSDDSEKEENLNALDKEVADQYGSFHSIRQLVALAKDDL
PYVMIAIFSLLLCSAAQIFLPYYTGQVLNYIVIDRSVEKFKEAMLYMAII
TLAAGFFSGTRAGFFTLVFARYVLRLQKQLFESIMKMEIGFFDVRKTGEI
TSRLTSDCTKVGDGLGLNFNIFLRSIVRVIGILAFMLKISWRLSIVTLVS
VPVIGILSEAFGDKYRKLAEQVQNSLAVANESAEEAISCMRTVRSFAAES
EEVDRYSEHLQKTYKIRVKEAILVCGYXAEEAISCMRTVRSFAAESEEVD
RYSEHLQKTYKIRVKEAILVCGYRWSTELTDLTMTLIILYFGGQLVFRNE
LSGGHLVSFILYSMDLGYAIDDIGNVYTGLMEAVGASKKILVYMQREPKI
TYDGNQSPDSGIDGHIQFKDVSFSYPSRPDIPVLDKINFTVNKGEVVALV
GPSGGGKSSIINLLEHFYEPTKGQVLIDNIDVKNYDHNFIHTTMSLVQQE
PVLFARKISENINYGLKPKADQDLIKNSAIMANAHDFVDDLPEKYATETG
EKGVQLSGGQKQRVAIARALIRNPTILILDEATSALDSESEYIVQQAINK
NLTGRTVLLIAHRLSTVEKADKILVIEKGKIVEEGNHKDLVDKGGVYSAL
VQRQLLGYDDEHTRGGSRKIDIHKSDDRSHPKGSPEKHSYSVSPVRC

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_007378	XLOC_007378	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00013197	TCONS_00013197	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003593	AAA+_ATPase
IPR011527	ABC1_TM_dom
IPR003439	ABC_transporter-like
IPR017871	ABC_transporter_CS
IPR027417	P-loop_NTPase

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport
GO:0006810	transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding
GO:0042626	ATPase activity, coupled to transmembrane movement of substances
GO:0016887	ATPase activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0006810	transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016887	ATPase activity
molecular_function	GO:0042626	ATPase activity, coupled to transmembrane movement of substances
molecular_function	GO:0005524	ATP binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003593	AAA+ ATPase domain	SMART	SM00382	AAA_5	coord: 593..780 e-value: 2.0E-17 score: 73.9
None	No IPR available	GENE3D	3.40.50.300		coord: 563..801 e-value: 8.4E-75 score: 250.9
None	No IPR available	GENE3D	1.20.1560.10		coord: 162..426 e-value: 6.9E-52 score: 175.7
None	No IPR available	PIRSF	PIRSF002773	ABC_prm/ATPase_B	coord: 426..825 e-value: 3.9E-178 score: 591.9 coord: 10..429 e-value: 3.7E-79 score: 264.7
None	No IPR available	GENE3D	1.20.1560.10		coord: 427..554 e-value: 9.3E-23 score: 80.1
None	No IPR available	CDD	cd03249	ABC_MTABC3_MDL1_MDL2	coord: 566..804 e-value: 1.74064E-119 score: 363.013
IPR011527	ABC transporter type 1, transmembrane domain	PFAM	PF00664	ABC_membrane	coord: 429..514 e-value: 6.4E-13 score: 48.9 coord: 203..422 e-value: 1.6E-48 score: 165.7
IPR011527	ABC transporter type 1, transmembrane domain	PROSITE	PS50929	ABC_TM1F	coord: 205..532 score: 46.628
IPR011527	ABC transporter type 1, transmembrane domain	SUPERFAMILY	90123	ABC transporter transmembrane region	coord: 192..423
IPR011527	ABC transporter type 1, transmembrane domain	SUPERFAMILY	90123	ABC transporter transmembrane region	coord: 429..548
IPR003439	ABC transporter-like	PFAM	PF00005	ABC_tran	coord: 584..734 e-value: 2.0E-34 score: 119.0
IPR003439	ABC transporter-like	PROSITE	PS50893	ABC_TRANSPORTER_2	coord: 566..803 score: 27.745
IPR017871	ABC transporter, conserved site	PROSITE	PS00211	ABC_TRANSPORTER_1	coord: 706..720
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 560..805

Blast

[Close]

BLAST of TCONS_00013197-protein vs. Swiss-Prot (Human)
Match: ABCB9 (ATP-binding cassette sub-family B member 9 OS=Homo sapiens GN=ABCB9 PE=1 SV=1)

HSP 1 Score: 592.038 bits (1525), Expect = 0.000e+0
Identity = 307/808 (38.00%), Postives = 493/808 (61.01%), Query Frame = 0

Query:    1 MKKVPSILLVTLIAVIDLLACILIFVLLEDQKEIGDEIFSFSYGGSTFDLVIWSCFRLCIFLGASIGLVRNPD-SVKKFRKSTKMMVYYGCGQAIYVVLKIMFFTEYNMDKMGKRVWLLIGISLFTCLTPYIGWKIYADVPIVKRKQGFTSINDDGDDTDSIKSDDSEKEENLNALDKEVADQYGSFHSIRQLVALAKDDLPYVMIAIFSLLLCSAAQIFLPYYTGQVLNYIVIDRSVEKFKEAMLYMAIITLAAGFFSGTRAGFFTLVFARYVLRLQKQLFESIMKMEIGFFDVRKTGEITSRLTSDCTKVGDGLGLNFNIFLRSIVRVIGILAFMLKISWRLSIVTLVSVPVIGILSEAFGDKYRKLAEQVQNSLAVANESAEEAISCMRTVRSFAAESEEVDRYSEHLQKTYKIRVKEAILVCGYXAEEAISCMRTVRSFAAESEEVDRYSEHLQKTYKIRVKEAILVCGYRWSTELTDLTMTLIILYFGGQLVFRNELSGGHLVSFILYSMDLGYAIDDIGNVYTGLMEAVGASKKILVYMQREPKITYDGNQSPDSGIDGHIQFKDVSFSYPSRPDIPVLDKINFTVNKGEVVALVGPSGGGKSSIINLLEHFYEPTKGQVLIDNIDVKNYDHNFIHTTMSLVQQEPVLFARKISENINYGLKPKADQDLIKNSAIMANAHDFVDDLPEKYATETGEKGVQLSGGQKQRVAIARALIRNPTILILDEATSALDSESEYIVQQAINKNLTGRTVLLIAHRLSTVEKADKILVIEKGKIVEEGNHKDLVDKGGVYSALVQRQLLG 807
            M+   ++++      +D+     I+V     + + ++I  F+   S  DL     +R C+ LGA+IG+ +N     ++ R S  ++        IY ++K++ F+E          W L   +  +    ++ W + + V     + G          T +++   + + E      +   +Q  S  ++++L++  K D+ +++ A F L++ +  + FLPYYTG+ ++ IVI +S+++F  A++ + ++ + + F +G R G FTL+FAR  +RL+  LF S++  E  FFD  +TG++ SRLTSD T V D +  N N+FLR+ V+V G++ FM  +SW+LS+VT +  P+I ++S  +G  Y++L+++VQN+LA A+ +                                              AEE IS M+TVRSFA E EE + Y   LQ+ YK+  KEA     Y W + LT L + + ILY+GG LV   +++ G+L++FI+Y   LG  ++ +G+VY+GLM+ VGA++K+  ++ R+P + +DG+ +PD  ++G + F++V+F+Y +RP   VL  ++F+++ G+V ALVGPSG GKSS +N+LE+FY    G+VL+D   +  YDH ++H  +SLV QEPVLFAR I++NI+YGL P    +++  +A  ANAH F+ +L + Y+TETGEKG QLSGGQKQRVA+ARAL+RNP +LILDEATSALD+ESEY++QQAI+ NL   TVL+IAHRLSTVE A  I+V++KG++V++G H+ L+ +GG+Y+ LVQRQ+LG
Sbjct:    1 MRLWKAVVVTLAFMSVDICVTTAIYVFSHLDRSLLEDIRHFNIFDSVLDLWAACLYRSCLLLGATIGVAKNSALGPRRLRASWLVITLVCLFVGIYAMVKLLLFSEVRRPIRDPWFWALFVWTYISLGASFLLWWLLSTV-----RPG----------TQALEPGAATEAEGFPGSGRPPPEQ-ASGATLQKLLSYTKPDVAFLVAASFFLIVAALGETFLPYYTGRAIDGIVIQKSMDQFSTAVVIVCLLAIGSSFAAGIRGGIFTLIFARLNIRLRNCLFRSLVSQETSFFDENRTGDLISRLTSDTTMVSDLVSQNINVFLRNTVKVTGVVVFMFSLSWQLSLVTFMGFPIIMMVSNIYGKYYKRLSKEVQNALARASNT----------------------------------------------AEETISAMKTVRSFANEEEEAEVYLRKLQQVYKLNRKEAAAYMYYVWGSGLTLLVVQVSILYYGGHLVISGQMTSGNLIAFIIYEFVLGDCMESVGSVYSGLMQGVGAAEKVFEFIDRQPTMVHDGSLAPDH-LEGRVDFENVTFTYRTRPHTQVLQNVSFSLSPGKVTALVGPSGSGKSSCVNILENFYPLEGGRVLLDGKPISAYDHKYLHRVISLVSQEPVLFARSITDNISYGL-PTVPFEMVVEAAQKANAHGFIMELQDGYSTETGEKGAQLSGGQKQRVAMARALVRNPPVLILDEATSALDAESEYLIQQAIHGNLQKHTVLIIAHRLSTVEHAHLIVVLDKGRVVQQGTHQQLLAQGGLYAKLVQRQMLG 744

The following BLAST results are available for this feature:

BLAST of TCONS_00013197-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00013197-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ABCB9	0.000e+0	38.00	ATP-binding cassette sub-family B member 9 OS=Homo...	[more]

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TCONS_00013197-protein (polypeptide) - C. hemisphaerica