TCONS_00013162-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00013162-protein
Unique NameTCONS_00013162-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length565

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00013162-protein ID=TCONS_00013162-protein|Name=TCONS_00013162-protein|organism=Clytia hemisphaerica|type=polypeptide|length=565bp
EILLLEHQKSKAKVSLKIMEEFVQTHVHEDVSVVTIRTVTKMFKQGLTIP
YIARYQKDRIDGADAKTLRQVEEGMHAYDNLQGRISKVLKSIENLEVSQG
YINQIKAATTLDDVEALYQPYKKGGKGTYAERAKKLGLNDAAQHLLKGQQ
VNIEQLVNQEAKGLQSLAEVKKGISHIVAGEIANKNEIFQKLFQEAYTYV
FVLTKRTKDGVDKNEKFKDYYDIKRNITNLKEHQILAINRAEKQSIITVK
LQIHEAQRNRFIYWIKQTYNCNKNNLVNEAIEDGFKRLLEPRFFRKIRSK
LKKEAEVKSMNIFSENIRKLLLIAPIREKVLSIDPGFKNGCKIAVLDKNA
KMLTTAVIHPFTQSNKNNQAETVLIELIQKHRIKHIAIGNGTACRETERL
VAKLIESNKIAAKYSIVDESGASIYSITEDASKEFGHLDPNLISAVSIGR
RLQDPLLEICKLDPKTIGVGMYQHDVDQKTLSGVLEHSLSDVVNMVGVDV
NSCSIHMLKRISGLSTKQAQAIIEYRTKKNGIHNRQELLQIKGIGQISYK
NACXKNCYKSKELDK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007347XLOC_007347Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00013162TCONS_00013162Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006641YqgF/RNaseH-like_dom
IPR023323Tex-like_dom
IPR023319Tex-like_HTH_dom
IPR018974Tex-like_N
IPR032639Tex_YqgF
IPR012337RNaseH-like_dom
IPR010994RuvA_2-like
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006139 nucleobase-containing compound metabolic process
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 78..98
NoneNo IPR availableCOILSCoilCoilcoord: 139..159
NoneNo IPR availableGENE3D1.10.150.310coord: 501..562
e-value: 1.7E-11
score: 44.2
NoneNo IPR availablePFAMPF12836HHH_3coord: 493..548
e-value: 6.4E-17
score: 61.5
NoneNo IPR availableSUPERFAMILY158832Tex N-terminal region-likecoord: 30..324
IPR006641YqgF/RNase H-like domainSMARTSM00732rnase_8scoord: 328..426
e-value: 2.8E-24
score: 96.6
IPR006641YqgF/RNase H-like domainGENE3D3.30.420.140coord: 331..472
e-value: 2.0E-47
score: 160.5
IPR023323Tex-like domainGENE3D1.10.3500.10coord: 126..330
e-value: 1.1E-37
score: 129.9
IPR023319Tex-like protein, HTH domainGENE3D1.10.10.650coord: 18..124
e-value: 5.3E-18
score: 64.8
IPR018974Tex-like protein, N-terminalPFAMPF09371Tex_Ncoord: 31..196
e-value: 1.4E-32
score: 112.6
IPR032639Tex protein, YqgF-like domainPFAMPF16921Tex_YqgFcoord: 329..453
e-value: 3.4E-46
score: 156.7
IPR012337Ribonuclease H-like domainSUPERFAMILY53098Ribonuclease H-likecoord: 329..471
IPR010994RuvA domain 2-likeSUPERFAMILY47781RuvA domain 2-likecoord: 472..552

Blast
[Close]
BLAST of TCONS_00013162-protein vs. Swiss-Prot (Human)
Match: SRBD1 (S1 RNA-binding domain-containing protein 1 OS=Homo sapiens GN=SRBD1 PE=1 SV=2)

HSP 1 Score: 338.961 bits (868), Expect = 2.495e-105
Identity = 196/536 (36.57%), Postives = 316/536 (58.96%), Query Frame = 0 
Query:   39 VTKMFKQGLTIPYIARYQKDRIDGADAKTLRQVEEGMHAYDNLQGRISKVLKSIENLE----VSQGYINQIKAATTLDDVEALYQPYKKGGKGTYAERAKKLGLNDAAQHLL-KGQQVNIEQLVNQEAKGLQSLAEVKKGISHIVAGEIANKNE---IFQKLFQEAYTYV-FVLTKRTKDGVDKNE--KFKDYYDIKRNITNLKEHQILAINRAEKQSIITVKLQIHEAQRNRFIYWIKQTYNCNKN-------NLVNEAIEDGFKRLLEPRFFRKIRSKLKKEAEVKSMNIFSENIRKLLLIAPIREKVL-SIDPGFKNGCKIAVLDKNAKMLTTAVIHPFTQSNKNNQAETVLIELIQKHRIKHIAIGNGTACRETERLVAKLIESNKIAA---KYSIVDESGASIYSITEDASKEFGHLDPNLISAVSIGRRLQDPLLEICKLDPKTIGVGMYQHDVDQKTLSGVLEHSLSDVVNMVGVDVNSCSIHMLKRISGLSTKQAQAIIEYRTKKNGIHNRQELLQIKGIGQISYKNA 552
            + ++F    TIP+I RY+K+ I+  DA +LR+V++ +   + L+    KV  +I+ ++    +S+  +  +    T +++E +  PYK G KGT A+RA++LGL  AA+ LL K  ++++   +  + KGL +L +++ G+ HI+A  IA   +     + L Q+ +  +   L K +   V++ +  KF  Y     NI N+  HQILAINR E   ++TVK+ I +  ++ F  W  Q     ++        ++  ++ D FKRL+ P   R+ R+KL  +AE +S+ +F  N+R+LLL +P+  + L  +DPG+K+GCK+A++   +++L T V+  +    +  +    +  L+       + IGNGTACRETE   A LI  N  A     Y IV E+GASIYS++ +A+KE   LDPNL SAVSI RR+QDPL E+ K++PK IGVGMYQHDV Q  L   L+  + + V+ VGVD+N CS  +L+ I+GL+  +A+ IIE+R K     NR++L ++KG+G  S++  
Sbjct:  232 IIRLFNDDNTIPFIIRYRKELINNLDADSLREVQQTL---EELRAVAKKVHSTIQKIKKEGKMSECLLKAMLNCKTFEELEHVSAPYKTGSKGTKAQRARQLGLEGAARALLEKPGELSLLSYIRPDVKGLSTLQDIEIGVQHILADMIAKDKDTLDFIRNLCQKRHVCIQSSLAKVSSKKVNEKDVDKFLLYQHFSCNIRNIHHHQILAINRGENLKVLTVKVNISDGVKDEFCRWCIQNRWRPRSFARPELMKILYNSLNDSFKRLIYPLLCREFRAKLTSDAEKESVMMFGRNLRQLLLTSPVPGRTLMGVDPGYKHGCKLAIISPTSQILHTDVV--YLHCGQGFREAEKIKTLLLNFNCSTVVIGNGTACRETEAYFADLIMKNYFAPLDVVYCIVSEAGASIYSVSPEANKEMPGLDPNLRSAVSIARRVQDPLAELVKIEPKHIGVGMYQHDVSQTLLKATLDSVVEECVSFVGVDINICSEVLLRHIAGLNANRAKNIIEWREKNGPFINREQLKKVKGLGPKSFQQC 762
The following BLAST results are available for this feature:
BLAST of TCONS_00013162-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SRBD12.495e-10536.57S1 RNA-binding domain-containing protein 1 OS=Homo... [more]
back to top