TCONS_00013152-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00013152-protein
Unique NameTCONS_00013152-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length557

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00013152-protein ID=TCONS_00013152-protein|Name=TCONS_00013152-protein|organism=Clytia hemisphaerica|type=polypeptide|length=557bp
KHDCWFEYLRQSHQLQQQLTTYFQRHSAAITSYDYFPTASSHVSVGSHPG
DYKKQPSSSMEDSPVVCLPPTLIVNERVSNSDKSSELSEERLCAICSDRS
TGRHYKVYSCEGCKNFFRRSVRKDVKYVCPAYGKCPVHKDQRTRCKACRL
RKCLKVGMRKEAVQCERKPLVLTQLSVPSIDDKVNRNKTIGLDYRTSSDE
SDDDKRSDPLTNKTSSTSSEKDNALLNVVIDRVDEEGGRALLNLAQSCQR
KPISIDSDENLMQYSEIGTIKSECSDETPPSSHTSYPAYTEKPPEVLSLA
HGRFHPYNRATSLPFRNSFTPQHNGWTLDMSTMSKNKNFVLEAPSISTTD
VGYLYEISTRLLFATLDWVQTLEPFQKLCKVDQFTLLLNKWHSLFILGMA
QSSPMFPISTMLFLANTGHEPHSDQTNTHLPWSTFLKLKDVIMNGFVECK
ISMEIYNCMKIIALFDPEIPGLGDREFTRRTCAHSRQLLEDLFENNQNPK
DSMDNDKTNLNQQRMFKVLECVNTIRKVEVTDTFFVPILRQTSIEYVIQK
VLNAEKD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007345XLOC_007345Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00013152TCONS_00013152Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001628Znf_hrmn_rcpt
IPR001723Nuclear_hrmn_rcpt
IPR000536Nucl_hrmn_rcpt_lig-bd
IPR013088Znf_NHR/GATA
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0008270zinc ion binding
GO:0003707steroid hormone receptor activity
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0043401steroid hormone mediated signaling pathway
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0043401 steroid hormone mediated signaling pathway
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003707 steroid hormone receptor activity
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001628Zinc finger, nuclear hormone receptor-typePRINTSPR00047STROIDFINGERcoord: 109..124
score: 59.48
coord: 93..109
score: 45.1
coord: 142..150
score: 56.25
coord: 150..158
score: 64.04
IPR001628Zinc finger, nuclear hormone receptor-typeSMARTSM00399c4goldcoord: 90..161
e-value: 1.5E-31
score: 120.8
IPR001628Zinc finger, nuclear hormone receptor-typePFAMPF00105zf-C4coord: 92..160
e-value: 2.4E-27
score: 95.1
IPR001628Zinc finger, nuclear hormone receptor-typePROSITEPS00031NUCLEAR_REC_DBD_1coord: 93..119
IPR001628Zinc finger, nuclear hormone receptor-typePROSITEPS51030NUCLEAR_REC_DBD_2coord: 90..165
score: 19.325
IPR001723Nuclear hormone receptorPRINTSPR00398STRDHORMONERcoord: 357..378
score: 21.35
coord: 378..394
score: 35.79
coord: 154..164
score: 55.68
IPR000536Nuclear hormone receptor, ligand-binding domainSMARTSM00430holicoord: 356..529
e-value: 9.3E-17
score: 71.7
IPR000536Nuclear hormone receptor, ligand-binding domainPFAMPF00104Hormone_recepcoord: 346..528
e-value: 1.4E-16
score: 60.5
IPR000536Nuclear hormone receptor, ligand-binding domainSUPERFAMILY48508Nuclear receptor ligand-binding domaincoord: 351..502
NoneNo IPR availableGENE3D1.10.565.10coord: 153..554
e-value: 4.9E-33
score: 114.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 191..220
NoneNo IPR availableCDDcd06916NR_DBD_likecoord: 93..164
e-value: 2.10573E-41
score: 142.701
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 91..172
IPR013088Zinc finger, NHR/GATA-typeGENE3D3.30.50.10coord: 85..152
e-value: 1.6E-28
score: 98.3

Blast
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BLAST of TCONS_00013152-protein vs. Swiss-Prot (Human)
Match: NR2C2 (Nuclear receptor subfamily 2 group C member 2 OS=Homo sapiens GN=NR2C2 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 8.107e-36
Identity = 123/495 (24.85%), Postives = 209/495 (42.22%), Query Frame = 0 
Query:   93 CAICSDRSTGRHYKVYSCEGCKNFFRRSVRKDVKYVCPAYGKCPVHKDQRTRCKACRLRKCLKVGMRKEAVQCERKPLVLTQ-----------------------LSVPS-IDDKVNRNKTIGLDYRTSSDESDDDKRSDPLTNKTSSTSSEKDNALLNVVIDRVDEEGGRALLNLAQSCQRKPISIDSDENLMQYSEIGTIKSECSDETPPSSHTSYPAYTEKPPEVLSLAHGRFHPYNRATSLPFRNSFTPQHNGWTLDMSTMSKNKNFVLEAPSISTTDVGYLYEISTRLLFATLDWVQTLEPFQKLCKVDQFTLLLNKWHSLFILGMAQSSPMFPISTML-----FLANTGHEPHSDQTNTHLPWSTFLKLKDVIMNGFVECKISMEIYNCMKIIALFDPEIPGLGDREFTRRTCAHSRQLLEDLFENNQNPKDSMDNDKTNLNQQRMFKVLECVNTIRKVEVTDT---FFVPILRQTSIEYVIQKVLNAE 555
            C +C D+++GRHY   SCEGCK FF+RSVRK++ Y C +   C ++K  R RC+ CRL+KCL++GM+ E+VQ ERKP  + +                       ++ P+ + DK    +T  LD     +      R D      + + +E     L  + + V      +L NL++S      S    E+    SEI       +     +  +S P+  +    + +   G  H  +R  S P      P        +S         + +P     +V Y+ E ++RLLF ++ W +++  FQ L +    +L+   W+ LF LG+AQ + +  +ST+L      L N+  E                KL++   N   +  I    Y  +K I LF P+ PGL       +    ++  L+D  +   +            +  R+ ++L  +  +R +    T   FF  ++   SI+ +I  +L  E
Sbjct:  117 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKKCLEMGMKMESVQSERKPFDVQREKPSNCAASTEKIYIRKDLRSPLIATPTFVADKDGARQTGLLDPGMLVNIQQPLIREDGTVLLATDSKAETSQGALGTLANVV-----TSLANLSESLNNGDTSEIQPED-QSASEITRAFDTLAKALNTTDSSSSPSLADG---IDTSGGGSIHVISRDQSTPIIEVEGPL-------LSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQE-FCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEKAQMELQDYVQKTYSE-----------DTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYILKME 583
The following BLAST results are available for this feature:
BLAST of TCONS_00013152-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NR2C28.107e-3624.85Nuclear receptor subfamily 2 group C member 2 OS=H... [more]
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