TCONS_00013089-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00013089-protein
Unique Name	TCONS_00013089-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	398

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00013089-protein ID=TCONS_00013089-protein|Name=TCONS_00013089-protein|organism=Clytia hemisphaerica|type=polypeptide|length=398bp
MEKLKVLSLNCWGLRFLSKDLDQRMAALGDLLAKSDYDIIGLQEVWVEEH
YLSIKEKIKNILPYSHRFISNGFISTGCVTFSKYPIIDTLFQRYLFNGYF
YDYNHGDWYAGKGITGVIIKHPKKDIYFFNTHMHANYDYQNAKFHFNECR
TLQAYQAAQFVKHVTRPSDPIIFSGDFNHESHELGMRGLKELISLRDTHD
VCEKKCGDLATVDCESNHYLEPTEAAKRIDFIFCNDFFTCDESKLACRQI
PNSKMHYSDHEGYEVELTFHHDKESVDHSKMEDYKSMGLLSKIHDCMKEG
ERISGELSWVLIITLAIAFSLVVGLPACYAGLDMFAHPSTIWASVVFFCQ
LIIVVFCAIYLWVVLSLRKCEMHTFKGIAQEIEIKMKQLVSSNGKKSD

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_007326	XLOC_007326	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00013089	TCONS_00013089	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005135	Endo/exonuclease/phosphatase

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005135	Endonuclease/exonuclease/phosphatase	GENE3D	3.60.10.10		coord: 1..278 e-value: 3.6E-34 score: 117.9
IPR005135	Endonuclease/exonuclease/phosphatase	PFAM	PF03372	Exo_endo_phos	coord: 7..190 e-value: 9.0E-10 score: 38.4
IPR005135	Endonuclease/exonuclease/phosphatase	SUPERFAMILY	56219	DNase I-like	coord: 2..267

Blast

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BLAST of TCONS_00013089-protein vs. Swiss-Prot (Human)
Match: NSMA (Sphingomyelin phosphodiesterase 2 OS=Homo sapiens GN=SMPD2 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 4.456e-39
Identity = 88/287 (30.66%), Postives = 142/287 (49.48%), Query Frame = 0

Query:    3 KLKVLSLNCWGLRFLSKDLDQRMAALGDLLAKSDYDIIGLQEVWVEEHYLSIKEKIKNILPYSHRFISNGFISTGCVTFSKYPIIDTLFQRYLFNGYFYDYNHGDWYAGKGITGVIIKHPKKDIYFFNTHMHANYDYQNAKFHFNECRTLQAYQAAQFVKHVTRPSDPIIFSGDFNHESHELGMRGLKELISLRD----THDVCEKKCGD-LATVDC-ESNHYLEPTEAAKRIDFIFCND----FFTCDESKLACRQIPNSKMHYSDHEGYEVELTFHHDKESVDHS 279
            +L++ +LNCWG+ +LSK    RM  LGD L +  +D+  L+EVW E+ +  +++K+    P +H F S G I +G   FSK+PI +     Y  NGY Y  +HGDW++GK +  +++      +  + TH+HA Y+ Q   +  +  R  QA++ AQF+ H ++ +D ++  GD N    +LG   LKE   L D    T D    + G+ +   +C  S   L+P     RID++        + +C   +      P+     SDHE     L   H     + S
Sbjct:    8 RLRIFNLNCWGIPYLSKHRADRMRRLGDFLNQESFDLALLEEVWSEQDFQYLRQKLSPTYPAAHHFRS-GIIGSGLCVFSKHPIQELTQHIYTLNGYPYMIHHGDWFSGKAVGLLVLHLSGMVLNAYVTHLHAEYNRQKDIYLAH--RVAQAWELAQFIHHTSKKADVVLLCGDLNMHPEDLGCCLLKEWTGLHDAYLETRDFKGSEEGNTMVPKNCYVSQQELKPFPFGVRIDYVLYKAVSGFYISCKSFETTTGFDPHRGTPLSDHEALMATLFVRHSPPQQNPS 291

The following BLAST results are available for this feature:

BLAST of TCONS_00013089-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00013089-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NSMA	4.456e-39	30.66	Sphingomyelin phosphodiesterase 2 OS=Homo sapiens ...	[more]

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TCONS_00013089-protein (polypeptide) - C. hemisphaerica