TCONS_00013080-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00013080-protein
Unique NameTCONS_00013080-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length200

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00013080-protein ID=TCONS_00013080-protein|Name=TCONS_00013080-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
MSRYRKSVTSVYVKNIHNEVRPDDLRKMFLKYGDISDVYVPLDYFTREPR
GFAYVQFDNRDDAEDAIHYLDGTNFFGRNLEVTLAQGDRKTPGQMRYKDG
GSGGGGRRRRSYSRSRSRSRSRSPRRRRHSRSRSPPPRRRSPPRRRSRSQ
SPPRRRTRTPSRSRSRSRSRSRSRSPSHDRHRSRSRSRSRSRSVSPQHRN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007323XLOC_007323Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00013080TCONS_00013080Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003954RRM_dom_euk
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003954RNA recognition motif domain, eukaryoteSMARTSM00361rrm2_1coord: 10..83
e-value: 2.4E-4
score: 30.5
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 10..83
e-value: 1.4E-24
score: 97.7
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 11..80
e-value: 6.7E-20
score: 70.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 9..87
score: 19.075
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 7..115
NoneNo IPR availableGENE3D3.30.70.330coord: 2..102
e-value: 9.9E-26
score: 89.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..200

Blast
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BLAST of TCONS_00013080-protein vs. Swiss-Prot (Human)
Match: SRS12 (Serine/arginine-rich splicing factor 12 OS=Homo sapiens GN=SRSF12 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.890e-35
Identity = 95/234 (40.60%), Postives = 135/234 (57.69%), Query Frame = 0 
Query:    1 MSRY-RKSVTSVYVKNIHNEVRPDDLRKMFLKYGDISDVYVPLDYFTREPRGFAYVQFDNRDDAEDAIHYLDGTNFFGRNLEVTLAQGDRKTPGQMRYKD---------------------------------GGSGGGGRRRRSYSRSRSRSRSRSPRRRRHSRSRSPPPRRRSPPRRRSRSQSPPRRRTRTPSRSRSRS---RSRSRSRSPSHDRHRSRSRSRSRSRSVSPQ 197
            MSRY R   TS++++N+ +  RP+DLR+ F +YG I DVY+PLD++TR PRGFAYVQF++  DAEDA++ L+     GR +E+  AQGDRKTPGQM+ K+                                   S    R RR +S S+S+SRS+S  RR  S  +S  PRR    R RSRS+S  ++R+++  +S+S S   ++ S ++S SH RH   S S +RS   SP+
Sbjct:    1 MSRYTRPPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKERHPCSPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRR-FSYSQSKSRSKSLPRRSTSARQSRTPRRNFGSRGRSRSKS-LQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRH---SDSIARSPCKSPK 229
The following BLAST results are available for this feature:
BLAST of TCONS_00013080-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SRS121.890e-3540.60Serine/arginine-rich splicing factor 12 OS=Homo sa... [more]
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