TCONS_00012983-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00012983-protein
Unique Name	TCONS_00012983-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	260

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00012983-protein ID=TCONS_00012983-protein|Name=TCONS_00012983-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
MDQSASVHVWTVVRTQIDNLSEHKNVTDDLGLAPHGRVKLVHSTAITPPG
VSVTSFTHLFSMTSLKVNEANPNDMYAGTGSGEILHMTRFSNRPTPRLFR
QGEGSNKVNSIDINPWKMPYMLACYDDGCVRLFHVKTEDALMTWANTTSG
ASLLHVQWSRSRPSVFFTMDSDSVLYIWNLLESDVAPIHQMKIQRKDKRA
VSFTLANDYAAMGKGSPGRPSEMALIFGDGSVEIHRLTKKLFTMQPDELD
AMDSFLANIT

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_007279	XLOC_007279	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00012983	TCONS_00012983	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001680	WD40_repeat
IPR015943	WD40/YVTN_repeat-like_dom
IPR017986	WD40_repeat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 95..134 e-value: 1.1 score: 16.6 coord: 137..179 e-value: 3.8 score: 13.4
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 14..251 e-value: 3.9E-14 score: 51.8
IPR017986	WD40-repeat-containing domain	SUPERFAMILY	50978	WD40 repeat-like	coord: 7..211

Blast

[Close]

BLAST of TCONS_00012983-protein vs. Swiss-Prot (Human)
Match: WDR60 (WD repeat-containing protein 60 OS=Homo sapiens GN=WDR60 PE=1 SV=3)

HSP 1 Score: 122.865 bits (307), Expect = 1.192e-31
Identity = 88/265 (33.21%), Postives = 138/265 (52.08%), Query Frame = 0

Query:    1 MDQSASVHVWTVVRTQIDNLSEHKNVTDDLGLAPHGRVKLVHSTAITPPGVSVTSFTHLFSMTSLKVN----EANPNDMYAGTGSGEILHMTRFSNRPTPRLFR-QGEGSN--KVNSIDINPWKMPYMLACYDDGCVRLFHVKTEDALMTWANTTSGASLLHVQWSRSRPSVFFTMDSDSVLYIWNLLESDVAPIHQMKIQRKDKRAVSFTLANDYAAMGKGSPGRPSEMALIF--GDGSVEIHRLTKKLFTMQPDELDAMDSFL 256
            +D+S  ++VW VV     +++       DLGL P GRVKLVHS A+   G S++   + F  T+  +N     ++PN    GT  G I H TR   R  P+LF+ Q  G    KVN ID +P+  P  LA   DG +RL  + +   L+ W ++T   ++  +QWS +RP+VF   D  S +YIW+LL+SD+ P+ + ++     R V+       AA+G+      S +AL+     GS++I  L ++    + DE + +   L
Sbjct:  802 LDESGVLNVWVVVELPKADIA---GSISDLGLMPGGRVKLVHS-ALIQLGDSLSHKGNEFWGTTQTLNVKFLPSDPNHFIIGTDMGLISHGTRQDLRVAPKLFKPQQHGIRPVKVNVIDFSPFGEPIFLAGCSDGSIRLHQLSSAFPLLQWDSSTDSHAVTGLQWSPTRPAVFLVQDDTSNIYIWDLLQSDLGPVAKQQVS--PNRLVAM------AAVGEPEKAGGSFLALVLARASGSIDIQHLKRRWAAPEVDECNRLRLLL 1054

The following BLAST results are available for this feature:

BLAST of TCONS_00012983-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00012983-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
WDR60	1.192e-31	33.21	WD repeat-containing protein 60 OS=Homo sapiens GN...	[more]

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TCONS_00012983-protein (polypeptide) - C. hemisphaerica