TCONS_00012957-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012957-protein
Unique NameTCONS_00012957-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length139

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012957-protein ID=TCONS_00012957-protein|Name=TCONS_00012957-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
MTKRSSSSTSLVSKDDSGKPKKSRQTNISDVQKFPFKNPEFQHSGTVKSG
KKKGWKGLKQISSSERSQAPVDAPTYMNIESPPPLKPVRKYSDISGQLAK
YTDPETGLYYSSTEEYKQIKRLPTDIVQGYLTLRNASTK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007276XLOC_007276Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012957TCONS_00012957Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013272Vps72/YL1_C
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013272Vps72/YL1, C-terminalSMARTSM00993YL1_C_2coord: 90..119
e-value: 3.4E-11
score: 53.2
IPR013272Vps72/YL1, C-terminalPFAMPF08265YL1_Ccoord: 91..119
e-value: 6.7E-13
score: 48.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..90

Blast
[Close]
BLAST of TCONS_00012957-protein vs. Swiss-Prot (Human)
Match: IN80C (INO80 complex subunit C OS=Homo sapiens GN=INO80C PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.552e-32
Identity = 54/109 (49.54%), Postives = 75/109 (68.81%), Query Frame = 0 
Query:   34 FPFKNPEFQHSG---TVKSGKKKGWKGLKQISSSERSQA-PVDAPTYMNIESPPPLKPVRKYSDISGQLAKYTDPETGLYYSSTEEYKQIKRLPTDIVQGYLTLRNAST 138
             PFK+P F HSG    V   K + WK LKQI +SER+    ++ P Y +I++PP  KP +KYSD+SG LA YTDP++ L +S+ EE+  I+RLP+D+V GYL LR A++
Sbjct:   81 LPFKDPNFVHSGHGGAVAGKKNRTWKNLKQILASERALPWQLNDPNYFSIDAPPSFKPAKKYSDVSGLLANYTDPQSKLRFSTIEEFSYIRRLPSDVVTGYLALRKATS 189
The following BLAST results are available for this feature:
BLAST of TCONS_00012957-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IN80C1.552e-3249.54INO80 complex subunit C OS=Homo sapiens GN=INO80C ... [more]
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