TCONS_00012907-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00012907-protein
Unique Name	TCONS_00012907-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	825

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00012907-protein ID=TCONS_00012907-protein|Name=TCONS_00012907-protein|organism=Clytia hemisphaerica|type=polypeptide|length=825bp
MKTFLLGVLLLGVQTLLAGTEDVYNIYEEKESKCLHVVDDGNNFNITFQE
RTRDEETGKDSCARFKMNKSTKEMVKYISPNNTDYCVYINIITGGNQEIL
ITRKHKPKTAREGKLSWLMNLKIKQEFPLIFTFDDTNPKNRPIINVKAQS
FGMFYYQNTSCIKPRSKSNKTHLERYKTIDECILYYRYDELRNDKDNVVY
LGKGRPKLVLKTWLTDYLKYDEKDKKTHNYHALPYQYSTEVSVDLKTREI
HKIDESTREQLKESKIFIEINFDNLQEAQVSQPSKSMDELNNQKNALENS
MSFSSDAQKITEELVKDVSLVLKNMKDKGNKKEDGNQTSKGFEVTKFLRD
VGDLVSDKIGNETKEFYAKGFDDLEFGIAHFKGDTFDGYDFPPNNDVNKP
NIHLPRNITSGNVDQSLLKIKSILYQPLNAMKNTSKGTLLTNNVISTRVS
PKIRDLTKENEKITLRFPIMATGNLTREEMKRRIQCVYWDYNENTWQKDG
CRLVLPPVSMDGNSSTNENGVSSVTCECDHLTDFSILLSVVNPDQLGWTD
TDKENFHFITTTGCIVSIVFLIFAIIVILTRRKLRKNQRYQIHINLCFSL
ILGNLVLLLSEKEGKSKSHCMVISIMMFYFFLASFFWMLCEAIFVWRALI
TIFTENDRLGYYLLFGWGAPMGVVLATGLVSRDKLITDKTCWLSWEDSTI
YAFALPILTIIVINTLILAVVLVATSKHARETKRGRIRSLARMVLILLPV
FGLTWIFGVLSFNEETKIFRYIFATLNSFQGFLIFVCYIQASREVRKELR
KATWDQYSSLFKRSSRSHTISSTSF

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_007240	XLOC_007240	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00012907	TCONS_00012907	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000832	GPCR_2_secretin-like
IPR000203	GPS
IPR017981	GPCR_2-like

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity
GO:0004888	transmembrane signaling receptor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway
GO:0007166	cell surface receptor signaling pathway

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007166	cell surface receptor signaling pathway
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity
molecular_function	GO:0004888	transmembrane signaling receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 287..307
None	No IPR available	GENE3D	1.20.1070.10		coord: 547..825 e-value: 5.2E-42 score: 143.3
None	No IPR available	SUPERFAMILY	81321	Family A G protein-coupled receptor-like	coord: 557..818
IPR000832	GPCR, family 2, secretin-like	PRINTS	PR00249	GPCRSECRETIN	coord: 591..615 score: 25.76 coord: 622..645 score: 28.25 coord: 659..684 score: 26.4 coord: 740..760 score: 31.32 coord: 770..791 score: 34.21 coord: 701..726 score: 20.08 coord: 558..582 score: 28.61
IPR000832	GPCR, family 2, secretin-like	PFAM	PF00002	7tm_2	coord: 555..784 e-value: 6.0E-51 score: 173.0
IPR000203	GPS motif	SMART	SM00303	GPS_3	coord: 482..543 e-value: 1.4E-8 score: 44.5
IPR000203	GPS motif	PFAM	PF01825	GPS	coord: 484..537 e-value: 9.5E-12 score: 45.3
IPR000203	GPS motif	PROSITE	PS50221	GPS	coord: 483..543 score: 13.756
IPR017981	GPCR, family 2-like	PROSITE	PS50261	G_PROTEIN_RECEP_F2_4	coord: 556..792 score: 31.892

Blast

[Close]

BLAST of TCONS_00012907-protein vs. Swiss-Prot (Human)
Match: AGRD1 (Adhesion G-protein coupled receptor D1 OS=Homo sapiens GN=ADGRD1 PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 9.779e-51
Identity = 123/405 (30.37%), Postives = 202/405 (49.88%), Query Frame = 0

Query:  430 AMKNTSKGTLLTNNVISTRVSPKIRDLTKENEKITLRFPIMATGNLTREEMKRR--------IQCVYWDYN--ENTWQKDGCRLVLPPVSMDGNSSTNENGVSSVTCECDHLTDFSILLSVVNPDQLGWTDTDKENFHFITTTGCIVSIVFLIFAII--VILTRRKLRKNQRYQIHINLCFSLILGNLVLLLSEKEGKSKSHCMVISIMMFYFFLASFFWMLCEAIFVWRALITIF-TENDRLGYYLLFGWGAPMGVVLATGLVSRDKLITDKTCWLSWEDSTIYAFALPILTIIVINTLILAVVLVATSKHARETKR-----GRIRSLARMVLILLPVFGLTWIFGVLSFNEETKIFRYIFATLNSFQGFLIFVCYIQASREVRKELRKAT--WDQYSSLFKRS 814
            AM +       T+++IS  VSP       +N   +    +     LTR++            + C + D++  E  W   GC L            T  N   SV C C HLT+F+IL+ VV P +L      +     I+  GC +S++ L+  ++   +L+     +NQRY IH NL F++++  ++LL+S +     + C V+++++ YFFL++F WML E + ++  +I +F +E+ +  YY   GWG P+ + + +   + D   T   CWLS     I+AF  P L +IV+N  IL  V    S+ + +  +        +  A+ V +LLP+ G +W+FGVL+ N    +F+Y+FATLNS QG  IF+ +   + EVR   +  T  W   SS  + S
Sbjct:  448 AMHHQDCLLFATSHLISLEVSPP--PTLSQNLSGSPLITVHLKHRLTRKQHSEATNSSNRVFVYCAFLDFSSGEGVWSNHGCAL------------TRGNLTYSV-CRCTHLTNFAILMQVV-PLELA--RGHQVALSSISYVGCSLSVLCLVATLVTFAVLSSVSTIRNQRYHIHANLSFAVLVAQVLLLISFRLEPGTTPCQVMAVLLHYFFLSAFAWMLVEGLHLYSMVIKVFGSEDSKHRYYYGMGWGFPLLICIISLSFAMDSYGTSNNCWLSLASGAIWAFVAPALFVIVVNIGILIAVTRVISQISADNYKIHGDPSAFKLTAKAVAVLLPILGTSWVFGVLAVNGCAVVFQYMFATLNSLQGLFIFLFHCLLNSEVRAAFKHKTKVWSLTSSSARTS 834

The following BLAST results are available for this feature:

BLAST of TCONS_00012907-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00012907-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
AGRD1	9.779e-51	30.37	Adhesion G-protein coupled receptor D1 OS=Homo sap...	[more]

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TCONS_00012907-protein (polypeptide) - C. hemisphaerica