TCONS_00012882-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00012882-protein
Unique Name	TCONS_00012882-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	732

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00012882-protein ID=TCONS_00012882-protein|Name=TCONS_00012882-protein|organism=Clytia hemisphaerica|type=polypeptide|length=732bp
MEPRKETGYEVAERIANQRKRTDKNKSPSKTLNDKYALRHNESQFNNDNN
GKSRSSRQTQQPLNIETNNETGRFELLHPEQQQNTKSSNNTSHKKQRRVS
STLSPIRKIITKKMSMAFSRSNSGMVRADISGFQQQEEEKTAVRKDLRWH
ATFLFLLAVSATAIVLLDTQIKILWTRERDFLDTLDRNTTDTEQRKIIEN
GLDKLDLYRKLGIALKSLLTVSSILSCVSLLYYYRNLFRLKKIRHFFPRK
MSFMRCTPLVKKYLIECVICLFHVPPFLDLYVYIPNEVQVFVILRLYLLG
RYLKEKHDLMNSQSTRFLASVTKTELTSMFLFKTFFMQYPFQLILLAYVI
LLFIGGYGVWLIENRYTYQDTVWMLIITMTTVGFGDLTPKTTVGRFCVGI
TAIVGIFLMALFISLVNEALMLQRREKRILAYVENQDLTRHRKITALNAI
GLWYKYYAHRNKHIRRSGESASFIGGFRNDRTTHQDLMNKIKGKLLETDM
FHAVNEWRKIKNARGGNYFAQEFMIEDMKNMMTDLSSKFNELDDKIDNVS
VDLKNIQEQNKKKKSVEKKETKEEKEPKTSITTKSHDEIKDSHMRIQNNG
NCHYTSPKNINFSNVTRPQLNGGSHNNKNNNYGGLKMEQIDRYVTRSRKN
VQDFIQKHQNDDSQVIRKNELIVAFKLLKNQAQIMNNALDDIYYKTRQDI
CDLENLISSLLVCTDGEHEDTVDYVPSRELPV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_007225	XLOC_007225	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00012882	TCONS_00012882	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013099	K_chnl_dom

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 525..576
None	No IPR available	GENE3D	1.10.287.70		coord: 337..428 e-value: 8.3E-18 score: 63.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 558..588
None	No IPR available	SUPERFAMILY	81324	Voltage-gated potassium channels	coord: 327..448
IPR013099	Potassium channel domain	PFAM	PF07885	Ion_trans_2	coord: 349..421 e-value: 5.5E-13 score: 48.6

Blast

[Close]

BLAST of TCONS_00012882-protein vs. Swiss-Prot (Human)
Match: KCNN3 (Small conductance calcium-activated potassium channel protein 3 OS=Homo sapiens GN=KCNN3 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.182e-16
Identity = 94/406 (23.15%), Postives = 168/406 (41.38%), Query Frame = 0

Query:  197 IIENGLDKLDLYRK---LGIALKSLLTVSSILSCVSLLYYYR---NLFRLKKIRHFFPRKMSFMRCTPLVKKYLIECVICLFHVPP-----FLDL---YVYIPNEVQ--------VFVILRLYLLGRYLKEKHDLMNSQSTRFLASVTKTELTSMFLFKTFFMQYPFQLILLAYVILLFIGGYGVWLIENRYTYQD-------TVWMLIITMTTVGFGDLTPKTTVGRFCVGITAIVGIFLMALFISLVNEALMLQRREKRILAYVENQDLTRHRKITALNAI-GLWYKYYAHRNKHIRRSGESASFIGGFRNDRTTHQDLMNKI---KGKLLETDMFHAVNEWRKIKNARGGNYFAQEFMIEDMKNMMTDLSSKFNELDDKIDNVSVDLKNIQEQNKKKKSVEKK 569
            +IE  L    LY K     +ALK L+++S+I+    ++ Y+     LF +      +   M++ R    +    +E ++C  H  P     F      + Y P+  +        + + LRLYL+ R +     L    S+R + ++ K    + F+ KT     P  ++L+  + L  I  + V + E  +  QD        +W++ IT  ++G+GD+ P T  G+    +T I+G    AL +++V   L L + EK +  ++ +  LT+  K  A N +   W  Y                           H  L+ KI   K +  +     A+++ R +K         ++  + D  N + DLS        K+ NV  DL  I E N + + +EK+
Sbjct:  304 VIETELS-WGLYSKDSMFSLALKCLISLSTIILLGLIIAYHTREVQLFVIDNGADDWRIAMTYER----ILYISLEMLVCAIHPIPGEYKFFWTARLAFSYTPSRAEADVDIILSIPMFLRLYLIARVMLLHSKLFTDASSRSIGALNKINFNTRFVMKTLMTICPGTVLLVFSISLWIIAAWTVRVCERYHDQQDVTSNFLGAMWLISITFLSIGYGDMVPHTYCGKGVCLLTGIMGAGCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRIKNAAANVLRETWLIY--------------------------KHTKLLKKIDHAKVRKHQRKFLQAIHQLRSVK--------MEQRKLSDQANTLVDLS--------KMQNVMYDL--ITELNDRSEDLEKQ 660

The following BLAST results are available for this feature:

BLAST of TCONS_00012882-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00012882-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
KCNN3	1.182e-16	23.15	Small conductance calcium-activated potassium chan...	[more]

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TCONS_00012882-protein (polypeptide) - C. hemisphaerica