TCONS_00012817-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012817-protein
Unique NameTCONS_00012817-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1141

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012817-protein ID=TCONS_00012817-protein|Name=TCONS_00012817-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1141bp
MADAGFFRGTTAAQDSRFPDKQKKLMKSMRFEKSLGEKVDMEKVNLDVVK
PWIQKRITELLGGIEDEVLIEYIFQLLEESRHPDPKELQISVTGFLNGKN
ARIFMGELWTLLVSAQENIGGVPADFLEKKKEEIRKRKQETERIQENLRK
TQSMEADSTSKDTIPSMSMIKEIAKRSIKEELVDNFPRSSVPGTTVDPIA
KSSLMLDQARIRKSLVGYLESVPTTPVTRSNKPGWMAEHDKHVEIAKTSN
ANVLMIGDSIIQGLARYPKIWSKHFSTMKALNFGIGGERTQHVLWRVENG
EIPLNAQMIVLHVGTNNTDRDDPKDIANGCGAIAMMFQESKPNAKIIMTG
LLPRDLEPTHRRQQCANVNKCIKKLCKSGHIRNFYYLKPDDDWVLENGQL
NTKYYFQDHLHLVEEGDEKFAKSISEMITLIYSGGKPVYSSDSDSEEEFL
PRRNGARDRSRSNSRSRSRSPVHRRRRSRSRSRSAVRRRSRSRSHSPRRR
RYSRSPVRRYRSRSRSRSPRRRRGGYGGHRRRSPTFSRSRSRSKSPRRRR
RSLSGSRSPSPTRVINPNLRQLAKEPSPPPVKRKEESDEERVQIKPADEG
LMKDDDVTTTKKRNIRKRRDSTDQSEGENEEMNQSKDLDKSRDSSEERSS
RRKERRNRRDGSPSESRKRSKDRNRRRSSTPPRKRRKSPSASPTPQKRRR
RSRDSLSSRSPSPDVRRRKGRKQREREREIRERQERERRQREREDRERER
RDRERRERDRQRRRRSSEPDRVDRNAERRKIMEEVDRRMKNSSGSEAANS
PLRENPDESSDSEIERVEREQERRKQLERERREQRRKKSEERETRRNERR
RKSASVSAEEKDQESDEEEEKEQRSRRKVLPPKKKRSPSFSEDDKKKRAQ
TSDEDLLEREDRDVDKKRRQSRQRKRDTSSDFSDLNKQKKSGSPSPRRKQ
KKQRSEDDESEEERRSTSKGRKTRKEVSPEISENEDEEDETTTRKVVVKK
RSPSPSLSPEKSPSPKPSSRRKQRSPSPAVRRKRSPTPDNDPEEDEKEVE
EEEEEPSESEAESSRSSRKKHRSHKESRKERKHHKKHKSRKSKKSKKSRR
RSTSSEESSAEEQSNSEDELRERALKSMSGKKSRGSSDESD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007195XLOC_007195Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012817TCONS_00012817Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002483PWI_dom
IPR013830SGNH_hydro
Vocabulary: Biological Process
TermDefinition
GO:0006397mRNA processing
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006397 mRNA processing
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 124..151
NoneNo IPR availableCOILSCoilCoilcoord: 858..878
NoneNo IPR availableCOILSCoilCoilcoord: 724..764
NoneNo IPR availableCOILSCoilCoilcoord: 810..851
NoneNo IPR availableGENE3D1.20.1390.10coord: 25..132
e-value: 2.5E-37
score: 126.5
NoneNo IPR availableGENE3D3.40.50.1110coord: 133..430
e-value: 4.0E-25
score: 88.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 438..1141
IPR002483PWI domainSMARTSM00311pwi_2coord: 41..118
e-value: 4.9E-29
score: 112.4
IPR002483PWI domainPFAMPF01480PWIcoord: 47..118
e-value: 3.0E-27
score: 94.7
IPR002483PWI domainPROSITEPS51025PWIcoord: 28..129
score: 39.79
IPR002483PWI domainSUPERFAMILY101233PWI domaincoord: 26..136
IPR013830SGNH hydrolase-type esterase domainPFAMPF13472Lipase_GDSL_2coord: 256..417
e-value: 7.5E-11
score: 42.7
IPR013830SGNH hydrolase-type esterase domainSUPERFAMILY52266SGNH hydrolasecoord: 222..428

Blast
[Close]
BLAST of TCONS_00012817-protein vs. Swiss-Prot (Human)
Match: SRRM1 (Serine/arginine repetitive matrix protein 1 OS=Homo sapiens GN=SRRM1 PE=1 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 1.596e-50
Identity = 91/142 (64.08%), Postives = 119/142 (83.80%), Query Frame = 0 
Query:    3 DAGFFRGTTAAQDSRFPDKQKKLMKSMRFEKSLGEKVDMEKVNLDVVKPWIQKRITELLGGIEDEVLIEYIFQLLEESRHPDPKELQISVTGFLNGKNARIFMGELWTLLVSAQENIGGVPADFLEKKKEEIRKRKQETERI 144
            DAGFFRGT+A QD+RF +KQKKL+K ++F + L +KVDM KVNL+V+KPWI KR+TE+L G ED+V+IE+IF  L E ++PD K +QI++TGFLNGKNAR FMGELW LL+SAQENI G+P+ FLE KKEEI++R+ E E++
Sbjct:    2 DAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEIL-GFEDDVVIEFIFNQL-EVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIPSAFLELKKEEIKQRQIEQEKL 141
The following BLAST results are available for this feature:
BLAST of TCONS_00012817-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SRRM11.596e-5064.08Serine/arginine repetitive matrix protein 1 OS=Hom... [more]
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